Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1094 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  434 bits (1115), Expect = e-125
 Identities = 237/557 (42%), Positives = 340/557 (61%), Gaps = 3/557 (0%)

Query: 436  ITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMM 495
            ++E +     L L++ V++  +E + V D++ +I  VN AFT ITGY+  E++G+   ++
Sbjct: 522  LSERQEANRELSLASAVFEYCAEGIVVTDKDNLIEAVNPAFTQITGYTLEEVKGRSPAVL 581

Query: 496  YCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALF 555
                  H FY+QM   ++  G+WQGE+  +R+N + +  +L I  +KD  G   + + LF
Sbjct: 582  NSHQQPHHFYEQMWQSLKQYGKWQGEIWNKRKNGQIFPEYLAITVVKDDKGRVVQHIGLF 641

Query: 556  SDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFK 615
             DI+++K+ E  IW ++NYD LT LPNR++    LS  ++ A++     A++F+DLD FK
Sbjct: 642  LDISNRKKYEQDIWYKSNYDALTNLPNRQLYTSRLSQMLQLAEQRCCSVAVLFIDLDRFK 701

Query: 616  EVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHI 675
             +ND  GHA+GD LL   A+RL++ +   D VARL GDEF VV+        IE+ A++I
Sbjct: 702  YINDIYGHAVGDELLQVAAARLEALLEQHDFVARLSGDEFVVVMGHTKHQGEIEQRAQNI 761

Query: 676  LRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTP 735
            L+ ++ P+ +      ISAS+GI+ YP +  S+E L ++A+ AMY AK  GRN F YF+P
Sbjct: 762  LQHLSSPFGINRNELLISASVGISCYPSNGTSVEVLTRNAETAMYQAKQDGRNCFGYFSP 821

Query: 736  SMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPA 795
             M      R+ L   LR AVL  EF LHYQPIV  ++GE +  EALLRW HP+RG V P 
Sbjct: 822  DMNNNMLARITLEQSLRSAVLQHEFCLHYQPIVDTSSGEGVALEALLRWRHPQRGLVPPD 881

Query: 796  EFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFR--DEGALLHN 853
            EFIP+AE+TGLI  IG WV +QA R   Q   + G+ I +++N S  Q    D       
Sbjct: 882  EFIPIAEETGLIEPIGEWVIQQALRDLRQCH-SQGIMINMAINVSGRQLAHGDPSHFACM 940

Query: 854  WLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYL 913
               LLQ+ DV    V +EITE +L+  +    + L A R  GV++ LDDFGTGYSSL+YL
Sbjct: 941  LNGLLQKYDVAPQYVHIEITESILMADTELSLKALTAIRHLGVEIYLDDFGTGYSSLSYL 1000

Query: 914  KKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAG 973
            K+F I  +KID+SF  N+  D  D  L +AII M   L M+++AEGVE+E QR  L   G
Sbjct: 1001 KQFPISVIKIDKSFVDNMLEDRADANLIKAIITMGQSLDMRLVAEGVESEPQRSFLQGLG 1060

Query: 974  CDYGQGYLFSKPVSASE 990
            CD+ QGYL +KP+   E
Sbjct: 1061 CDFVQGYLVAKPMPLKE 1077