Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1036 a.a., diguanylate phosphodiesterase from Herbaspirillum seropedicae SmR1

 Score =  449 bits (1155), Expect = e-130
 Identities = 257/623 (41%), Positives = 370/623 (59%), Gaps = 11/623 (1%)

Query: 375  EDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCGTYT 434
            ED P++   +   + G+  +  +E R    +  + W+  +   +  DA         +  
Sbjct: 405  EDEPRIRAELARCMDGQK-REDVELRCVRKDGSVFWLALSCAPI-HDAQGRFTGFRTSSR 462

Query: 435  DITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRM 494
            DIT+ K IE  L++SA+ +D S E M + D N  I+ VN AFT+ITGYS  EI G+H  +
Sbjct: 463  DITDRKQIEAELRISAVAFD-SREGMLITDANSKILRVNKAFTEITGYSAEEIVGKHPNL 521

Query: 495  MYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVAL 554
            +  D +G  F+Q+M + IR  G+WQGE+  RR+N E Y  WLTI+ +K+KD      V+ 
Sbjct: 522  LRSDRHGPAFFQEMRESIRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDQQVTHYVST 581

Query: 555  FSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYF 614
              DI+D+K +E  I + A +D LT LPNR +LL+ L   I  + R +   AL+F+DLD+F
Sbjct: 582  HHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTKTCAALLFIDLDHF 641

Query: 615  KEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHK-----GIE 669
            K +NDT+GH  GD LL + A RL + VR+ D VAR+GGDEF VVL  + + +        
Sbjct: 642  KTLNDTIGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNELQQEAATQTR 701

Query: 670  RVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNR 729
             + E IL  +   Y L +     +ASIG T++   + S++ L+K AD AMY AK+ GRN 
Sbjct: 702  AIGEKILTALGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNA 761

Query: 730  FNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPER 789
              +F P+MQ     R  L   LR+A+   +  LHYQP V +  G V  AE L+RW HP+R
Sbjct: 762  LRFFDPAMQTAVLERATLEAGLRKAIDGNQLLLHYQPQV-VEGGRVTGAEVLVRWQHPQR 820

Query: 790  GSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQW-RKTLGVEIQISVNKSPIQFRDEG 848
            G V P +FIP+AE+TGLI+ +GNWV E A RQ A W  +    ++ I+VN S  Q R E 
Sbjct: 821  GMVPPGDFIPLAEETGLILSLGNWVLETACRQLATWAAQPQMADLSIAVNVSAPQLR-EP 879

Query: 849  ALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYS 908
              +   L+ +++       + +E+TE LL+D    + +K+ A +  GV+ SLDDFGTGYS
Sbjct: 880  DFVQTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYS 939

Query: 909  SLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQV 968
            SL+YLK+  ++ LKIDQSF R++  D ND ++ + I+ +A  LG+ VIAEGVET+AQR  
Sbjct: 940  SLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSF 999

Query: 969  LLRAGCDYGQGYLFSKPVSASEF 991
            L  AGC   QGY F +PV+   F
Sbjct: 1000 LADAGCHAYQGYFFCRPVTVEAF 1022