Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1037 a.a., diguanylate phosphodiesterase from Burkholderia phytofirmans PsJN

 Score =  442 bits (1138), Expect = e-128
 Identities = 283/723 (39%), Positives = 402/723 (55%), Gaps = 25/723 (3%)

Query: 285  MTVACKRTNHQVLLVISGYLDVT----AQTLADREVLASREQLELVLSSSDLGVWDWDI- 339
            + +A   T   +LL +  +L +T    A  LA       RE  E   + +D  V +W+I 
Sbjct: 307  LPIASTGTGLSLLLALLTWLMMTGRGRAMRLASAMTKELRENEEKFRAIADCTV-NWEIW 365

Query: 340  -RNDHIERNTRSA--DILGCDIDMLNANSRQWMDSIVAEDRPQVLQSIEAHIRGETPQHK 396
               D   R   SA    +G  +D   A        I   D P+V    +  ++G      
Sbjct: 366  WGTDGKPRWINSAVEAYIGYTVDECMALPDFAGTVIYPADIPRVAPEFQKALQGLRGDD- 424

Query: 397  MEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYDNS 456
            +E+R    +  + W L    V   D+    +    +  DITE K +E  L+++A+ +D S
Sbjct: 425  LEFRCVRKDGSLMW-LSASWVPITDSKGEFIGFRTSGRDITERKQVEAELRIAAVAFD-S 482

Query: 457  SEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRNKG 516
             E M + D +  I+ VN+AFT+ TGY+  EI GQ  R++    +   F+Q+M ++I + G
Sbjct: 483  MEPMMITDASATILRVNSAFTECTGYTAEEIVGQTPRVLRSGRHDDAFFQEMWEEIHSAG 542

Query: 517  EWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDITDKKQSEHLIWKQANYDT 576
             WQGE+  RR+N E Y  WLTI+ +   +G     V    DIT++K +E  I + A +D 
Sbjct: 543  GWQGEVWDRRKNGEVYPKWLTISAVMSDNGTVSHYVGTHHDITERKIAEERIKELAFFDA 602

Query: 577  LTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLLIETASR 636
            LT LPNR +LL+ L   I  + RN    AL+F+DLD+FK +NDTLGH  GDLLL + A R
Sbjct: 603  LTRLPNRTLLLDRLRQAITASARNEACGALLFIDLDHFKTLNDTLGHDKGDLLLQQVARR 662

Query: 637  LKSCVRDADVVARLGGDEFTVVLSSMADHK-----GIERVAEHILRRIAEPYYLGEETTH 691
            L   V ++D VAR+GGDEF VVL ++  ++       E V E IL  +  PY+LG+    
Sbjct: 663  LADSVLESDTVARVGGDEFVVVLGNLHKNRQEAANQTEAVGERILAVLGSPYHLGKIEYR 722

Query: 692  ISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIHDL 751
             SASIG T++     SI+ LLK AD AMY +K++GRN   +F P MQ     R  L   L
Sbjct: 723  TSASIGATVFRGHQASIDELLKQADLAMYKSKERGRNAVRFFDPDMQTVVVQRAALEAGL 782

Query: 752  RQAVLNKEFELHYQPIV--TMATGEVLKAEALLRWFHPERGSVSPAEFIPVAEDTGLIVE 809
            R A+ + +F LHYQ  V  T  TG    AEAL+RW HP+RG V PAEFIP+AE+TGLIV 
Sbjct: 783  RNAIEDNQFLLHYQAQVVGTRVTG----AEALVRWQHPQRGIVPPAEFIPLAEETGLIVA 838

Query: 810  IGNWVFEQAARQSAQWRKTLGV-EIQISVNKSPIQFRDEGALLHNWLELLQQLDVTGAGV 868
            +G+WV E A  Q A+W     +  + I+VN S  QFR +   + N L ++ +       +
Sbjct: 839  LGSWVLEAACAQLARWAARPDMAHLTIAVNVSVQQFR-KADFVDNVLTIIGRTGARPDRL 897

Query: 869  CVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFT 928
             +E+TE +L+D    + EK+ A +  G+  +LDDFG GYSSL+YLK+  +D LKID+SF 
Sbjct: 898  KLELTESVLVDNVQDIIEKMSALKAKGIVFALDDFGIGYSSLSYLKRLPLDQLKIDRSFV 957

Query: 929  RNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQGYLFSKPVSA 988
            R++  D ND  +   I+ +A  LG+ VIAEGVETEAQR  L  AGC   QGY F +P+  
Sbjct: 958  RDVLVDSNDAVIARTIVALARSLGLGVIAEGVETEAQRDFLAAAGCYAYQGYYFCRPLPI 1017

Query: 989  SEF 991
             +F
Sbjct: 1018 EDF 1020