Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1059 a.a., diguanylate phosphodiesterase from Burkholderia phytofirmans PsJN

 Score =  406 bits (1043), Expect = e-117
 Identities = 222/562 (39%), Positives = 331/562 (58%), Gaps = 2/562 (0%)

Query: 433  YTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHI 492
            +T I + K +E+ L+L   V++ SSEA+ +LD    ++T NA+F   TGY   ++ G+  
Sbjct: 491  FTPINQIKSMEQRLELWGKVFEASSEAILILDAQRRLVTANASFYRATGYRADDVAGKEP 550

Query: 493  RMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRV 552
              +       +    + D +  +  W GE   RRR   +Y  WL I+ ++D+       +
Sbjct: 551  AFLSGAHVQGDLLAAVIDSVDRQSAWHGEANVRRRAGSDYPAWLMISAVRDRRASLSHYI 610

Query: 553  ALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLD 612
                DITD+K+SE  I   A +D LT LPNR + ++ L A +  A    +  A++F+DLD
Sbjct: 611  CTLIDITDRKKSEARIQFLAEHDLLTELPNRALFMKRLRAVLDHARVADHRVAVLFIDLD 670

Query: 613  YFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVA 672
             FK VND+LGH +GD LL   + RL   VR  D V+RL GDEFT++L+ ++    + R  
Sbjct: 671  RFKHVNDSLGHHIGDSLLRSVSRRLVRAVRADDTVSRLSGDEFTIILNGVSGAAEVGRTI 730

Query: 673  E-HILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFN 731
            E  +L  + +P+ L      +S S+G+ L+PDD   IE L+++AD AMY AK  GRN   
Sbjct: 731  EDRLLPLMRQPHELDGMALPVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVK 790

Query: 732  YFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGS 791
            +FTP M E A +R +L   LR A+   EF L YQP +   TGE++  E LLRW +P  G 
Sbjct: 791  FFTPDMAERALHRAQLEASLRNAIAMDEFRLEYQPCIDARTGELVAVEGLLRWHNPRLGK 850

Query: 792  VSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALL 851
            VSPAEFIP+AE++ LI+ +G WV EQA RQ A+W       +++S+N S IQ RD   L+
Sbjct: 851  VSPAEFIPIAEESRLIISMGAWVIEQACRQIAEWNDEGLAPLRVSINVSAIQLRDPN-LI 909

Query: 852  HNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLA 911
                  L++  V    + +EITE +L+D++      +   R  G+++SLDDFG GYSSL+
Sbjct: 910  GMLATSLERNRVAPERLELEITETVLMDSAEHYESTVAGIRKLGIKLSLDDFGVGYSSLS 969

Query: 912  YLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLR 971
            YL +F +D LKID++F +++     D  +  AII + H+LG++V+AEGVE+E Q Q+L  
Sbjct: 970  YLNRFPLDRLKIDRAFVKDMLDAPADLAIIRAIIELGHELGLRVVAEGVESEHQAQILRN 1029

Query: 972  AGCDYGQGYLFSKPVSASEFAS 993
             GCD  QG+LFS  +S ++  S
Sbjct: 1030 IGCDELQGFLFSPSLSPADLGS 1051