Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  484 bits (1245), Expect = e-140
 Identities = 267/679 (39%), Positives = 402/679 (59%), Gaps = 10/679 (1%)

Query: 313  DREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGCDIDMLNANSRQWM-DS 371
            +  + AS E+L+L L +S  G+WDW+I+   + R          DI +   +S   + D+
Sbjct: 826  ETSIRASEERLKLALWASGDGMWDWNIQEQQVYRTHT-------DIPVSQWSSHTLLHDN 878

Query: 372  IVAEDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCG 431
               EDR +  Q +  H++G TP  +MEYR++    +  WIL+ GKVV  +     +RM G
Sbjct: 879  AHPEDRERFKQVLTDHLQGHTPFFEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMTG 938

Query: 432  TYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQH 491
            T  +IT  KLIE  L LS+ V ++ +EA+ V   +  I +VN AF+ ITGYSE +I  ++
Sbjct: 939  TTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKY 998

Query: 492  IRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRR 551
            +  +       + +  +   +     W GE+  R R  +  ++WL IN + D  G     
Sbjct: 999  LIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNRARKAILVWLEINQVIDVKGETSHF 1058

Query: 552  VALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDL 611
            VA+F+DIT++K++E  +   A++DTLTGLPNR +  + L+  I  A R+ N  AL+FLDL
Sbjct: 1059 VAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDL 1118

Query: 612  DYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERV 671
            D FK +ND++GH +GDLLL   A RL++ VR+ D VARLGGDEFT++L  +A  K    +
Sbjct: 1119 DRFKHINDSMGHHIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLI 1178

Query: 672  AEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFN 731
            +E +L+    P+ L +++  IS SIGI+LYP+D+  ++ L+K AD AMY AK  GRN F 
Sbjct: 1179 SEKVLKAFQAPFLLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQ 1238

Query: 732  YFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGS 791
            ++T  + E A   ++L   L+QA+   E  L YQP   +  G +   EALLRW H E G 
Sbjct: 1239 FYTNKLNEMATRHVQLEAGLKQAISRNELSLVYQPKFCLRKGSLTGLEALLRWHHSELGP 1298

Query: 792  VSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALL 851
            +SPAEFIP+AE+TG+I +IG+WV   A +Q A+W +    +I ++VN S  Q + +  ++
Sbjct: 1299 ISPAEFIPLAEETGIINQIGHWVINHACQQLAEWNELGFGDISMAVNLSARQLKAD--II 1356

Query: 852  HNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLA 911
                  L    +    + +E+TE +++         L   +  G+ +++DDFGTGYSSL+
Sbjct: 1357 STIEVALSVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLS 1416

Query: 912  YLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLR 971
            YLK+F ID LKID+ F R+I  D +D  +  AII +AH L + V+AEGVET+ Q   L  
Sbjct: 1417 YLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLAL 1476

Query: 972  AGCDYGQGYLFSKPVSASE 990
             GCD  QG+L SKP+SA +
Sbjct: 1477 QGCDQVQGFLLSKPLSAQD 1495