Pairwise Alignments

Query, 684 a.a., type I restriction-modification system, M subunit, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 529 a.a., N-6 DNA methylase from Pantoea sp. MT58

 Score = 77.4 bits (189), Expect = 2e-18
 Identities = 82/336 (24%), Positives = 130/336 (38%), Gaps = 71/336 (21%)

Query: 268 KKAYPEIFSGNEEIILSDRALAFMVSELAKYDFTR----TEMDAKGAAYQEVVGDNL--- 320
           +K    +F      I   + L  +VS +   D+         D  G  Y+ ++  N    
Sbjct: 83  QKLVQAVFQNVNTTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142

Query: 321 RGDRGQYFTPRGAIKLIVEMMAPQPHEKVLDPSCGTGGFLEQTLSFINRKLCEEEEVKLG 380
           +   GQYFTPR  IK I+ ++ PQP E V DP+ GT GFL +   ++  +          
Sbjct: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREIVQDPAAGTAGFLIEADRYVKSQ---------- 192

Query: 381 AETTEEFISIQQQIKKFAENNLF-GCDFDPFLCRASQMNVVMASNAMANIYHMNSLEYPH 439
              T +   +    + F  +  F G +  P   R + MN ++         H       H
Sbjct: 193 ---TNDLDDLDNDTQDFQIHRAFVGLELVPGTRRLALMNCLL---------HDIEGNLDH 240

Query: 440 GHLKGVEPAKSKIPVGDSSGKDGS----IDVILTNPPFGSDIPVTDKQILEQYDLAYVWE 495
           G           I +G++ G DG       V+ TNPPFGS       +            
Sbjct: 241 G---------GAIRLGNTLGSDGETLPMAHVVATNPPFGSAAGTNITRTFVH-------- 283

Query: 496 RTENGGFRKTERRKDAVSPEILFIERCVQWLKQGGRMGIVLPDGIL--GNPGDEYIRWWL 553
                            + ++ F++  V+ L  GGR  +V+PD +L  G  G + IR  L
Sbjct: 284 --------------PTSNKQLCFMQHIVETLLPGGRAAVVVPDNVLFEGGKGTD-IRRDL 328

Query: 554 MQECWVLGCVDLPVESFIVEANVNILTSLLFLKKKT 589
           M +C +   + LP   F  +    + T++LF  K T
Sbjct: 329 MDKCHLHTILRLPTGIFYAQ---GVKTNVLFFTKGT 361