Pairwise Alignments

Query, 684 a.a., type I restriction-modification system, M subunit, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 517 a.a., Type I restriction enzyme EcoR124II M protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 56.2 bits (134), Expect = 4e-12
 Identities = 74/344 (21%), Positives = 130/344 (37%), Gaps = 91/344 (26%)

Query: 304 EMDAKGAAYQEVVGDNLRG---DRGQYFTPRGAIKLIVEMMA--PQPHEKVLDPSCGTGG 358
           E+D  G AY+ ++     G     G+++TP+   +++ E++A   Q    V DP+CG+G 
Sbjct: 178 EIDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGHQRLRNVYDPTCGSGS 237

Query: 359 FLEQTLSFINRKLCEEEEVKLGAETTEEFISIQQQIKKFAENNLFGCDFDPFLCRASQMN 418
            L +  S  N                                +++G + +P     ++MN
Sbjct: 238 LLLRAASIGNAV------------------------------DIYGQEKNPTTYNLARMN 267

Query: 419 VVMASNAMANIYHMNSLEYPHGHLKGVEPAKSKIPVGDS----SGKDGSIDVILTNPPFG 474
           ++                     L G+  +  KI  GD+    +  D   D ++ NPPF 
Sbjct: 268 ML---------------------LHGIRFSNFKIENGDTLEWDAFGDTQFDAVVANPPFS 306

Query: 475 SDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAVSPEILFIERCVQWLKQGGRMGI 534
           ++    DK                +  F K  R     + +  FI   +  L +GG M  
Sbjct: 307 AEWSAADKF-------------NTDDRFSKAGRLAPRKTADYAFILHMIYHLNEGGTMAC 353

Query: 535 VLPDGIL--GNPGDEYIRWWLMQECWVLGCVDLPVESFIVEANVNILTSLLFLKKKTDTE 592
           V P G+L  GN      R+ + ++ +V   + LP   F      +I T +L  KK    +
Sbjct: 354 VAPHGVLFRGNAEGVIRRFLIEKKNYVDAIIGLPANIFY---GTSIPTCILVFKKCRKED 410

Query: 593 KDAIAFGGEPEYPVFMAVAEKVGFDRRGNTLYERHPDGEEKVIE 636
            + +      E+       EKV   +  N L E+H    +K++E
Sbjct: 411 DNILFIDASKEF-------EKV---KTQNKLREQH---IQKIVE 441