Pairwise Alignments

Query, 318 a.a., ISSod11, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 333 a.a., Mobile element protein from Acidovorax sp. GW101-3H11

 Score =  365 bits (937), Expect = e-106
 Identities = 167/321 (52%), Positives = 231/321 (71%), Gaps = 3/321 (0%)

Query: 1   MKTSSYLLKAGVDYPTNWDEFVDWFHDEQSCTSYLYALRWPNGFICPSCSSHQSPYQLSN 60
           M+T       G DYP  W+EF+DWF  E++C ++L  LRWP GF+CP C +    Y+ S 
Sbjct: 1   METQMLTPTPGQDYPRTWNEFLDWFATEEACQAFLEKLRWPQGFVCPRCGNAGDVYRASR 60

Query: 61  GKLKCHACRFQCSVTSSTLFDKTRTPMKSWFAAVWFITNQKNGVSALGVQRLLGLGSYQT 120
            +L C +C++Q +VTS T+FDKTRTP++ W AA W++TNQK GVSALG+QR+LGLGSYQT
Sbjct: 61  TRLMCRSCQYQGTVTSGTIFDKTRTPLRVWLAAAWYLTNQKQGVSALGLQRVLGLGSYQT 120

Query: 121 AWSLMHKLRYAMVDPERDKLSGIVEVDETLIG---GVIPKSSIKNQQGKRKAIVLVAVEL 177
           AW+++H+ R AMV P RDKL G+VEVDET +       P +    +    K ++++AVE+
Sbjct: 121 AWTMLHRFRRAMVRPGRDKLKGLVEVDETYLSITDRKNPATPAGRKSSTTKVLMVMAVEI 180

Query: 178 LSPSGFGRIRLRQVESATKEHIHQFIQDVIEPGSTICSDGSQAYKQIDKKGYKHNRMVHL 237
           + P GFGRIRLR+++  +  H+  F+Q+V+EPG+ + +DGS AY+ + + GY H R V L
Sbjct: 181 VEPKGFGRIRLRRIDRDSASHVIPFVQEVVEPGAQVRTDGSAAYRALGELGYTHQRTVML 240

Query: 238 GSSVPAHETMAGVHRVSSLCKRWLLGTYQGAVKAKQLDYYLDEFTFRFNRRKSDSRGLLF 297
           GS VPAH +MAGVHRV+SL +RW+LGT+ G+V+   LD YLDEF FRFNRR S SRG+LF
Sbjct: 241 GSGVPAHVSMAGVHRVASLVQRWVLGTHHGSVQPDHLDAYLDEFVFRFNRRTSSSRGMLF 300

Query: 298 YRLLEQAVRSKPITYQSIKNR 318
           YRLL+QAV + P+TY  + ++
Sbjct: 301 YRLLQQAVVTPPVTYGDVVSK 321