Pairwise Alignments

Query, 177 a.a., 16S rRNA processing protein RimM (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 184 a.a., ribosome maturation factor RimM from Vibrio cholerae E7946 ATCC 55056

 Score =  204 bits (519), Expect = 7e-58
 Identities = 95/176 (53%), Positives = 126/176 (71%)

Query: 2   MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQ 61
           MS   + +V+GKLGS +GI+GWLK+ +YTD+ E IFDYSPW I + GEW E KV  W+  
Sbjct: 9   MSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRH 68

Query: 62  GKAVVAELEGVTTRERAQMLTNCEIGILPQQMNALPEDEFYWRDLIGCEVINTTGYNMGI 121
            K  V +L+G+  RE A +LTN EI I P  +  L EDEFYWR+L G +V+ T GY++G+
Sbjct: 69  NKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVTTNGYDLGV 128

Query: 122 VDQIVETGSNDVLLVKANAKDSFGKVERMVPFVPGQFILKVDVQGKQILVDWDPDF 177
           V  ++ETGSNDVL+VKAN KD+FG+ ER++PF+  Q I  VD Q ++I VDWDP F
Sbjct: 129 VTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPAF 184