Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 458 a.a., Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) from Xanthomonas campestris pv. campestris strain 8004

 Score =  579 bits (1492), Expect = e-170
 Identities = 300/459 (65%), Positives = 368/459 (80%), Gaps = 7/459 (1%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           MFE+LT RLS T++ + GRGRLTEEN++E  REVR+ALLEADVALPVV+  +  +K RAV
Sbjct: 1   MFESLTQRLSGTMERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAV 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKL 120
           GQEV KSL+PGQA IKIV+ EL   MG A   L+L    PA+++MAGLQGAGKTT+V KL
Sbjct: 61  GQEVLKSLTPGQALIKIVRDELTAVMGAAAADLNLNVPAPAIILMAGLQGAGKTTTVGKL 120

Query: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180
            K ++ + KK V+VVSADVYRPAAI+QL+TLA +V V FFPSD SQKP+DI +AAI+ A+
Sbjct: 121 AKHMKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSDASQKPVDIVRAAISDAR 180

Query: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEAL 240
             F DV+++DTAGRL +D AMMDEIKALHAA+ P ETLFVVDAMTGQDAANTAKAF EAL
Sbjct: 181 KSFADVLLVDTAGRLAIDAAMMDEIKALHAAVNPTETLFVVDAMTGQDAANTAKAFGEAL 240

Query: 241 PLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300
           PLTGV+LTK DGDARGGAALS+R+ITGKPIKF+G GEKTD L+ FHPDR+ASRIL MGDV
Sbjct: 241 PLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGTGEKTDGLDVFHPDRVASRILDMGDV 300

Query: 301 LSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQL 360
           LSL+E+VE  VD+EKA KLA+KV +G  FDL D +EQL+QM+NMGG+  +++KLPG+GQ+
Sbjct: 301 LSLVEQVEHSVDQEKAAKLAAKVAKGKKFDLNDMKEQLEQMQNMGGIHGLMDKLPGMGQI 360

Query: 361 PPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLLKQ 420
           P +   Q+  GK   +M AIINSMT KER+NP L+ GSR+ RIA GSG +  DVN+L+KQ
Sbjct: 361 PDNVKQQV-TGKEVPRMIAIINSMTKKERRNPALLNGSRRARIARGSGMQPADVNKLMKQ 419

Query: 421 FTQMQKMMKKMSAKGGMQKMMRGMRGMM-----PGGMKF 454
           + QM+KMM K+ A GGM+ +MR M+GMM      GGM F
Sbjct: 420 YQQMEKMMGKL-AGGGMKGLMRNMKGMMGAMGGRGGMPF 457