Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 445 a.a., signal recognition particle protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  412 bits (1060), Expect = e-120
 Identities = 218/447 (48%), Positives = 304/447 (68%), Gaps = 6/447 (1%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           MF+NL D+L R  K + G+G +TE NV ET++E+R ALL+ADV     + F ++V+++A+
Sbjct: 1   MFDNLQDKLDRAFKVLKGQGSITEINVAETMKEIRKALLDADVNYKTAKAFTDDVRQKAL 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKL 120
           GQ V  ++SPGQ   KI+  EL   MG     LD    P  ++++AGL GAGKTT   KL
Sbjct: 61  GQNVLTAVSPGQLLTKIMNDELAALMGGEVTELDTKANP-TIILIAGLNGAGKTTFAGKL 119

Query: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180
              L+ + KK +LV + D+YRPAA+ QLE L T V V  + +  S  P+ IA   IAH K
Sbjct: 120 ALHLKGKGKKPLLV-AGDMYRPAAVDQLEVLGTSVGVSVYANRASNDPVGIALEGIAHGK 178

Query: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEAL 240
               +V+I+DTAGRL +DE++M+EI  + A  +P E LFVVD+MTGQDA NTAK FN+ L
Sbjct: 179 QNGNNVIIIDTAGRLAIDESLMNEISEVKAKTQPHEILFVVDSMTGQDAVNTAKVFNDRL 238

Query: 241 PLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300
             TGV+LTK+DGD RGGAALSI+ +  KPIKF+G GEK +AL+ F+PDR+ASRILGMGDV
Sbjct: 239 DFTGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMEALDVFYPDRMASRILGMGDV 298

Query: 301 LSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQL 360
           +SL+E  +   D+++A +L  K+++   FD  DF  Q+QQ+K MG M  ++  +PGVG++
Sbjct: 299 VSLVERAQMQFDEKEAAELQKKIRK-NKFDFNDFYNQIQQIKKMGNMKDLMGMIPGVGKM 357

Query: 361 PPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLLKQ 420
             +    IQD    + +EAIINSMT  E++NPD I+ SR+ RIA GSG+++++V +L+KQ
Sbjct: 358 MKN--VDIQDDAF-KSIEAIINSMTPFEKENPDAIQQSRRLRIAKGSGSKVEEVTKLIKQ 414

Query: 421 FTQMQKMMKKMSAKGGMQKMMRGMRGM 447
           F  M+KMMK+ S       MM+GM  M
Sbjct: 415 FEDMRKMMKQFSNPAAAAAMMKGMPKM 441