Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 508 a.a., signal recognition particle protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  454 bits (1169), Expect = e-132
 Identities = 243/459 (52%), Positives = 325/459 (70%), Gaps = 10/459 (2%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           MF++L+DRL++  +  SG+ +L E N++E LREVR+ALLEADV   VV++F++ VKER +
Sbjct: 1   MFDSLSDRLTQAFRKFSGQSQLDENNIQEGLREVRLALLEADVNFKVVKDFIDRVKERCL 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKL 120
           GQ+V KSL+P Q  +K+V  EL + +G     LDL    P V+MM GLQG+GKTTS AK+
Sbjct: 61  GQDVLKSLTPAQQVVKVVHDELVELLGGGTTELDLRGAQPGVIMMVGLQGSGKTTSSAKI 120

Query: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180
             LLR R  +  LV   DVYRPAAI QL TLA ++D+ ++ S    KP+DI +AA+A AK
Sbjct: 121 ANLLRKRKMRPYLV-PVDVYRPAAIDQLVTLARQLDIPYYQSTPDMKPLDIVRAALADAK 179

Query: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEAL 240
            K    V+LDTAGRLHVDEA+MDE+ AL A   P E LFV DAMTGQDA   A AFNE L
Sbjct: 180 EKQCTAVLLDTAGRLHVDEALMDELAALKATFAPQEILFVADAMTGQDAVTVADAFNEKL 239

Query: 241 PLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300
            +TGV+LTK+DGDARGGAALSI+ +TG  +K++G+GEK   +E FHPDR+A RILGMGD+
Sbjct: 240 GITGVVLTKMDGDARGGAALSIKSVTGASVKYVGIGEKLSDIEVFHPDRVAGRILGMGDM 299

Query: 301 LSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQL 360
           L+LIE+ +  ++ ++A  L  K  Q  SFDLEDFR Q+++MK +G +  +++ +PG+G L
Sbjct: 300 LTLIEKAQSTIEADEAEALTKKF-QRASFDLEDFRTQMRRMKKLGSLEGILKMIPGMGAL 358

Query: 361 PPDALAQIQ-DGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLLK 419
             D L Q+    K   ++EAII+SMT KER+NPD+I GSR+ RIA GSGT +Q+VN+LL+
Sbjct: 359 -RDKLGQMSVPEKDMARIEAIISSMTMKERRNPDVINGSRRARIAKGSGTTVQEVNQLLR 417

Query: 420 QFTQMQKMMKKM----SAKGGMQKMMRGMRGM--MPGGM 452
            F QM++MMK++       GG    + GM GM  M GGM
Sbjct: 418 NFEQMREMMKRVMNMGKPGGGRMPRIPGMGGMGGMGGGM 456