Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 504 a.a., signal recognition particle protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  409 bits (1052), Expect = e-119
 Identities = 214/455 (47%), Positives = 305/455 (67%), Gaps = 4/455 (0%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           MFENL+DRLS     ++ +G L+E +V   LREVR+ALLEADV+LPV R+F+  V+E+A 
Sbjct: 1   MFENLSDRLSGVFDRLTKQGALSEADVATALREVRVALLEADVSLPVARDFIKAVQEKAT 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSM-GEANQALDLATQPPAVVMMAGLQGAGKTTSVAK 119
           GQ V KS++PGQ  +KIV  EL   + G+ +        PPA ++M GLQG GKTT+ AK
Sbjct: 61  GQAVTKSVTPGQQVVKIVHDELVHVLQGDEDPGALKIDNPPAPILMVGLQGGGKTTTTAK 120

Query: 120 LGKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHA 179
           + K L+ R  K +L+ S DV RPAA++QL  L  ++ V+  P    + P+ IA+ A   A
Sbjct: 121 IAKRLKERDGKKILMASLDVNRPAAMEQLAILGAQIGVDTLPIVKGEDPVAIARRAKTQA 180

Query: 180 KLKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEA 239
            L   DV +LDTAGRL +DE +M +++A+     P ETL VVD +TGQDA  TA+ F++ 
Sbjct: 181 SLGGYDVYMLDTAGRLSIDEELMAQVEAVRDVANPRETLLVVDGLTGQDAVTTAENFDDR 240

Query: 240 LPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 299
           + +TGV+LT++DGD RGGAALS+R +TG+PI+F+G+GEK DALE F PDR+A RILGMGD
Sbjct: 241 IGITGVVLTRMDGDGRGGAALSMRAVTGRPIRFVGLGEKMDALETFEPDRVAGRILGMGD 300

Query: 300 VLSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQ 359
           +++L+E+ +  ++ E+A ++  +  Q G F++ D R QL+QM+ MGG+  ++  +PG+ +
Sbjct: 301 IVALVEKAQETIEAEQAERMMKRF-QKGQFNMNDLRGQLEQMEKMGGVEGLMGMMPGMSK 359

Query: 360 LPPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLLK 419
           +         D K+ R+  A+I SMT KER NP +++ SRK+RIA G+G E+ D+N+LLK
Sbjct: 360 MKGKLDEAGFDDKVIRRQIALIQSMTKKERANPQILQASRKKRIAKGAGMEVSDLNKLLK 419

Query: 420 QFTQMQKMMKKMSAKG--GMQKMMRGMRGMMPGGM 452
              QM   MKKM   G  GM K + GM G   GGM
Sbjct: 420 MHRQMSDAMKKMGKMGKKGMMKSLGGMLGGGKGGM 454