Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 455 a.a., signal recognition particle protein from Burkholderia phytofirmans PsJN

 Score =  559 bits (1441), Expect = e-164
 Identities = 285/454 (62%), Positives = 354/454 (77%), Gaps = 5/454 (1%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           M +NLT R++R +K + G  RLTE N +E LREVR+ALLEADVALPVVREF+  VKE+A+
Sbjct: 1   MLDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKAL 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQA----LDLATQPPAVVMMAGLQGAGKTTS 116
           G+EV  SLSPGQA + +VQ EL   +G   +     L+LA  PPAV++MAGLQGAGKTT+
Sbjct: 61  GEEVISSLSPGQALVGVVQRELTAIIGGDYEGKAVELNLAVTPPAVILMAGLQGAGKTTT 120

Query: 117 VAKLGKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAI 176
           V KL KLLR ++KK VL VS DVYRPAAI QL+T+  +V  +FFPS+  QKP+DIA+AA+
Sbjct: 121 VGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPDQKPVDIARAAV 180

Query: 177 AHAKLKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAF 236
             AK  + DV+++DTAGRL +DEAMM EI ALH  LKP ETLFVVDAM GQDA NTAKAF
Sbjct: 181 DWAKRHYHDVLLVDTAGRLGIDEAMMQEITALHNTLKPAETLFVVDAMLGQDAVNTAKAF 240

Query: 237 NEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILG 296
           ++ALPLTGV+LTK+DGD+RGGAALS+RH+TGKPIKF+GV EK D LE F+PDR+A+RILG
Sbjct: 241 SDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFYPDRMANRILG 300

Query: 297 MGDVLSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPG 356
           MGD+L+L+EE +RGVD + A KLA KVK+GG FDL DFR QL QMK MGG+ S+++KLP 
Sbjct: 301 MGDILALVEEAQRGVDVQAAQKLADKVKKGGDFDLNDFRAQLTQMKGMGGLSSLMDKLPA 360

Query: 357 VGQLPPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNR 416
             Q         Q  K  R+ME IINSMT +ER  PDLIK +RKRRIAAG+G ++Q+VNR
Sbjct: 361 QFQQAAAGANMGQAEKQMRRMEGIINSMTPQERAKPDLIKATRKRRIAAGAGVQVQEVNR 420

Query: 417 LLKQFTQMQKMMKKMSAKGGMQKMMRGMRGMMPG 450
           +L Q+ QM+ MMKK+   G +QKMMRGM+GM+PG
Sbjct: 421 MLNQYDQMRTMMKKLKG-GNLQKMMRGMKGMLPG 453