Pairwise Alignments

Query, 262 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 298 a.a., FIG001154: CcsA-related protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  102 bits (254), Expect = 9e-27
 Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 18/263 (6%)

Query: 8   AMFFYCIALVLVTSRLFHP--QGPNRKAVAGIAAIAVVLHAAALSQAIF-TTDGQNFSLT 64
           A   Y +A  L+T  +     Q P R  +  +AA+A  LHA       F T  G +    
Sbjct: 40  AFALYLLAAGLLTRAVLRDGNQSPARWLLPALAAVA--LHAGYHVLVAFRTAGGPDMHFF 97

Query: 65  NVISLVNWIIAFTFTVMMFRLKVIVVVPVVYACSVLSVALL--WLLPPKFIIHFELYPEV 122
             +SL    +A    V   R ++  V  VV+  + + +A    +   P   + + L    
Sbjct: 98  AALSLTGLGMAGLTAVFGGRGRMAAVGVVVFPLAAILLACYHGYGHEPSADLGWRLE--- 154

Query: 123 LAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLML-SPSIPPLMTVEKQLYHLVIIG 181
             H  ++L+AY+ L IAAL AI L + +  L+++       ++PPL  +E  L+  + +G
Sbjct: 155 -LHAWMALLAYATLGIAALLAIMLWLQERALRRRDFHTWLRALPPLTELETLLFRTITVG 213

Query: 182 VILLSLSLATGFIFLDDMFADGKGHKAILSIIAWFVYIAML---WQQYWVGCKIRTAVIY 238
            ILL+L+L TG +F+ D  A    HK +LSI++W V+ A+L   W+  W G K   AV +
Sbjct: 214 FILLTLTLLTGLLFVQDFLAQRLLHKTVLSILSWIVFGALLIGRWRNGWRGTK---AVHW 270

Query: 239 TLTGATLLSLAYFGARIVKELIL 261
           TLT   LL L++FG++ V EL+L
Sbjct: 271 TLTAMALLVLSFFGSKFVIELVL 293