Pairwise Alignments

Query, 339 a.a., GTP-binding protein Era (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 308 a.a., GTP-binding protein Era (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  218 bits (556), Expect = 1e-61
 Identities = 121/302 (40%), Positives = 179/302 (59%), Gaps = 9/302 (2%)

Query: 45  CGMVAIIGRPNVGKSTLLNRLLGQKISITSKKPQTTRHRIMGIHTDGPRQIVFIDTPGLH 104
           CG VA+IG PN GKSTLLN L+GQK++I + KPQTTR++I+GI +    Q+VF+DTPG+H
Sbjct: 8   CGWVALIGPPNAGKSTLLNALIGQKVAIVTSKPQTTRNQIVGILSRKDAQVVFMDTPGIH 67

Query: 105 IEEQRAINRLMNRAAASSLADVSMVIFVVDGMTWTADDEMVLSKLRR-----GGEERKTV 159
               R +N+++ + A  S+     +I ++DG  +    +++   +         E R  V
Sbjct: 68  QLRGR-LNKMLLQTAWQSMNAADALIVMLDGDLYIRKPDLLDRDIAPLVEPIAAETRPVV 126

Query: 160 LAINKVDNIKDKEALFPYLEDVAKKYPFDEILPISASKGTNVKRILELAAQSLPENPFFF 219
           + +NK+D  +DK  + P LE ++  +P  E+ P SA     +  +L L    +PE P  +
Sbjct: 127 VVVNKIDLFRDKSKMLPLLERLSAMWPKAEVFPASALNKDGMDHLLRLIVGYMPEGPALY 186

Query: 220 PEDYVTDRSQRFMASEIVREKLMRFLGDELPYDATVEIEQFKMMENGVYQ--INALILVE 277
           PED ++    RFM +EIVREK+   L  ELPY   V+IEQ++  E G  Q  +NA+I V 
Sbjct: 187 PEDQISTLPVRFMTAEIVREKVFNKLRQELPYSTAVDIEQWE-EEEGRDQVIVNAVIYVA 245

Query: 278 REGQKRMVIGSKGERIRTIATQARLDMETLFDNKVFLEVWVKVKSGWADDERALRSLGYG 337
           R   K MVIG  G  I+ I  +AR D++ L + +V LE+WVKV+ GW +D   +RSLG  
Sbjct: 246 RPSHKSMVIGKGGATIKEIGIEARKDIQELLEKRVHLELWVKVREGWTEDLGFMRSLGLS 305

Query: 338 DD 339
            D
Sbjct: 306 PD 307