Pairwise Alignments

Query, 329 a.a., CobD-related protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 329 a.a., CobD-related protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  377 bits (967), Expect = e-109
 Identities = 189/327 (57%), Positives = 231/327 (70%), Gaps = 1/327 (0%)

Query: 3   SSFYQQLVEIDGALFEGFLVLFFALLLARLAPLPREMQPLIWFSHLAKQLAAKVNRPGRA 62
           S F  QL+ +DGALFEGFL++  AL LARLAPLPREMQPL+WF  LA++LA KVN P R 
Sbjct: 4   SQFVSQLIALDGALFEGFLIILCALPLARLAPLPREMQPLVWFGVLARELARKVNHPSRG 63

Query: 63  PSQQATAGFLAMLLLVFPFWAIITFLLELAAFPWFFEFLVLYLCLSDAGFSQVADEIAKA 122
           P QQ  AG +A +LLV PFW II FLL+LAAFPWFFEFL+LYLCLSDA F+QVA+E+ +A
Sbjct: 64  PRQQLIAGIMATILLVLPFWLIIAFLLDLAAFPWFFEFLILYLCLSDASFAQVAEEVQRA 123

Query: 123 LNREDNASAKKLLQPWVVRDTDNLSEVGLTKATIEKLATAPIYGTASTIFFFAIAGAPMV 182
           L   D   A+KLL+ ++ RDT  LSE GL KATIEKL TAPIYGTA  +FF+A+AGAPMV
Sbjct: 124 LGHGDKDRARKLLRQYLSRDTAELSEAGLAKATIEKLVTAPIYGTAGVVFFYALAGAPMV 183

Query: 183 LAVRMIKQLELSWPPIQPKYQYFCRTVHTLSTALLAIPAWLWSLSIAIQGGPKALALLFR 242
           L VRM+KQLEL WPP+ P ++ F   V+ L +ALL IPAWLWSL++AI GGP     L  
Sbjct: 184 LLVRMLKQLELVWPPMSPDFRAFVAPVNLLVSALLYIPAWLWSLTLAIVGGPSGFKALL- 242

Query: 243 TSKNHPALRGYVMSVSLVANILRIELGGPQKFSGQRIDVAKVVYGPQPHHEMIAPAIKLT 302
           T +    L   + +  + A +L  ELGGP K+ G R+ V KV  GP P    I  AIKL+
Sbjct: 243 TPRRWQPLSNPMRAAYVAATVLNTELGGPHKYRGNRVAVDKVGKGPLPDTAKIGEAIKLS 302

Query: 303 SRACAIWFSFITLLPFIWAGLRWLQTL 329
           +RAC  W +F+  LP  W  LR+ QTL
Sbjct: 303 NRACFSWLAFLLFLPLAWTLLRYSQTL 329