Pairwise Alignments

Query, 1007 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 966 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  270 bits (689), Expect = 5e-76
 Identities = 247/995 (24%), Positives = 420/995 (42%), Gaps = 111/995 (11%)

Query: 46   DKNDGIEKVTVTGSRIKRDSFSLSTPLQGLDAKDIADSGIGSLADILVDQIPALAEGVSS 105
            D    ++ V VTGSR++R     + P+  +  + IA +G  ++ D+L  ++P++A   ++
Sbjct: 50   DATQTLDSVVVTGSRLRRVDTETANPVVTVSQEQIAATGKATVGDLL-QELPSIAGNATN 108

Query: 106  TNSQSSVQNTGLSTIDLRNLGTDRTLTLIDGRRVVSNSYSGNYVSLSTIPAAMVDKVEII 165
              + +    TG S + LR LG  RTL L++G R+  N        ++ IPA+M++++E++
Sbjct: 109  PYTNNG-GGTGASAVSLRGLGDKRTLVLVNGIRLAYND-------VNAIPASMIERIEVL 160

Query: 166  TGGASAVYGSDAIAGVVNIITQQNKTGFEINARGGETTEGGGRETTVDAGYGADFNSDKG 225
            + GASAVYGSDAI GVVN I +    G + ++  G + E  G         G  F  ++G
Sbjct: 161  SDGASAVYGSDAIGGVVNFILRTRFDGVQFSSDFGTSKERDGNRRNFALTAGKTF--ERG 218

Query: 226  YIYASATYDKQHGLFATDRE--RALYESSFAYDKKQMCN-----TMNTADGYQCMRDITP 278
             + A  +Y     + A  R+  +     +     KQ  +     T+N  DG      +  
Sbjct: 219  SLIAGLSYHNIDPVSAAARDYSKDALALTDGVPVKQGSSATPTGTVNFNDGSDASSQLRQ 278

Query: 279  EDW--RERSNDIVGGRFKSNAWW-YDGTELKTDFKEERDGYNGYTTGLLKVPEDTLATAV 335
             +   R   N  V GR     +  YD            D YN     LL+ P+      V
Sbjct: 279  ANGCTRVTLNGGVSGRAGPGDFHCYDAAA---------DSYNYQPFNLLQTPQKRTNAFV 329

Query: 336  KVNYDLSESVRANAQVQFSRNTAFRRTDAEGQDYNDAELYIDPITGLPGMIDAGSILANN 395
               Y  S+SV          NT F +T++              I  +P   +  +IL ++
Sbjct: 330  LGTYRFSDSVEGYV------NTWFSKTESASI-----------IAPIPIFSNGDNILVSS 372

Query: 396  P--YIPAEI-----AATGGKSITWDRRFEEVGPVESDNERTTLRTWAGLQGDLFET-WTW 447
               Y P  +      ++G     ++ R   +G           +   GL+G   ++ W W
Sbjct: 373  QSYYNPFGVNFGTDRSSGTSYNDFNTRATVLGNRSYQYNTYNFQISPGLRGRFGDSSWQW 432

Query: 448  DASVGYGQFEQRQRRSNEISIRRLRNALNAVYAADGVTIQCASEAARAEGCVPVNIFGEG 507
            DA+  YG+ +Q+   +  +       A+   +      ++C S  A   GC P+N F   
Sbjct: 433  DATFNYGKVKQKSINNGFLDYATFNQAIGPSFLDSDGVVKCGSAGAAIAGCTPLNFFNLN 492

Query: 508  SISKEGA-DYIRANPYINTDITQFNALGYISGELFELPAGGVQSAFGMEYRRDTQAVDTD 566
              S       +  NP + +  T        +G LF++PAG    A G+ YR++     +D
Sbjct: 493  DSSNLATLQGMVVNPIVTSVYTVKQFEANANGTLFDMPAGAASLAAGLSYRKERSTTTSD 552

Query: 567  KAMRGDAITFNDVPPF-----EGDVTVWEAFGEANLPLLRDMSFANKLDVDVSLRLADYS 621
                GD      V  +      G   V EA+ EA  PLL+D+   N L++ +  R +DYS
Sbjct: 553  PLWTGDEDGLCGVIEYCASTLSGSFDVKEAYAEALFPLLKDLPGINALNITLGTRFSDYS 612

Query: 622  QKNIDLMSSYRTGILWEPIANYALRANYSRSQRAPNITELISPPRGDYDSIRDICNGVTA 681
              ++   ++ +  + + PI N  LR   S+  RAPNI EL +   GD  ++ D CNG T 
Sbjct: 613  --SVGSKTNSKVSLEYRPIENLLLRGTVSQVFRAPNINELYAGVAGDAATVNDPCNGYTG 670

Query: 682  TSTGAGHDSCRLDPGIAVAIASTGTFKAETGSKYSPNAG----NENLTEETADTYTLGFT 737
             S+ A              + + G+++   G      +G       L  ET  +Y +G  
Sbjct: 671  GSSVA-----------CANVPTDGSYQQSDGQVSGKVSGAAVAGYQLKPETGKSYDVGLV 719

Query: 738  MAPAFLEGFNLAVDYYDIKVADAIGSLSNEDILAECYNSSNPYGAGNEYCQDITRDTEGQ 797
              P +++G +L+ D++ I + D I ++S + +L +CY +S      + +C  I R+  G 
Sbjct: 720  YDPQWIDGLSLSADWWRIDLEDTITTVSAQTVLNQCYANS-----ASAFCPLIHRNGNGT 774

Query: 798  ITQVIQQELNLNDIVTRGIDFAMAYEWELADYGELSLNTNWTHVLEYSSSYYGAD-GLVA 856
            I  + +  +NL  +  +GIDF + Y      +G +++  N T++  Y       D   V 
Sbjct: 775  INYIAEPTVNLGKLWAKGIDFNLTYRLPETAWGNVNVGLNGTYLTRYDVLPDTTDPSSVT 834

Query: 857  EDYVGELTS--GIFED-RGTLSLTWSNDDWRVRWSAKY-KSAMVDSHDRVEEWNVLKAEN 912
               VG  T   G F   RG  +++W+  DW   W  +Y  +  + + D          + 
Sbjct: 835  IHNVGRYTQAYGNFPRWRGLGTVSWALGDWSATWRIRYVGNTAIGNSD---------PDQ 885

Query: 913  QAKLDAGDASAVANPETPEFLFYGSYITHDLSVSYTMDVSQAELRLYGGLRNIFDNQGPW 972
                D+   + V           G+Y+ ++L + Y  +V     R   G+ NI D Q P 
Sbjct: 886  SLSADSSQPTVVRK--------IGAYVYNNLQLGY--EVQPWHTRFEVGVDNIADKQPPL 935

Query: 973  VADGGDLIETGTGNYSSAYGGGVGRYAYLGAELKF 1007
                      G  N   A    +GR+ +  A +KF
Sbjct: 936  YYSN----NVGNANTDVATYDLLGRFYWARATVKF 966