Pairwise Alignments

Query, 1007 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 962 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  264 bits (674), Expect = 3e-74
 Identities = 244/926 (26%), Positives = 408/926 (44%), Gaps = 94/926 (10%)

Query: 6   LTLAIQASMFGIVPS-VAWAAEPIEVKAVKENATRNETETADKNDGIEKVTVTGSRIKRD 64
           + L   A   G++P+ +A A  P    A   NA   + ++A     ++++ +TGSRI+  
Sbjct: 1   MNLRTSAVRLGLLPAGIAIALTP----AFAANA---QEQSAPSTTTLDRIEITGSRIRSV 53

Query: 65  SFSLSTPLQGLDAKDIADSGIGSLADILVDQIPALAEGVSSTNSQSSVQNTGLSTIDLRN 124
               + P+  +  +DI  SG+ S+ DIL +   A  +  S     +S    G   ++L N
Sbjct: 54  DVETAQPVFTVTQQDIQKSGLVSVGDILQNLSIAGTQTYSKAAVLTSDPEQGGQYVNLYN 113

Query: 125 LGTDRTLTLIDGRRVVSNSYSGNYVSLSTIPAAMVDKVEIITGGASAVYGSDAIAGVVNI 184
           LG +RTL L++G+R  S S SG    +STIP+++++++E++  GASA+YGSDA+AGVVNI
Sbjct: 114 LGENRTLVLVNGKRWTS-SLSG-LTDMSTIPSSLIERIEVLKDGASAIYGSDAVAGVVNI 171

Query: 185 ITQQNKTGFEINARGGETTEGGGRETTVDAGYGADFNSDKGYIYASATYDKQHGLFATDR 244
           I +QN  G E +A  G+   G G +      + A   +D+  +   A Y  +  ++A DR
Sbjct: 172 ILRQNYDGAEASAYFGQNGRGDGSKE--QYSFTAGTTTDRSSLVFGANYTNEDPVWAKDR 229

Query: 245 ERALYESSFAYDKKQMCNT-----MNTADGYQCMRDITPEDWRERSNDIVGGRFKSNAWW 299
               Y +   + +  +  T       + D    +      D R      VG   ++ A +
Sbjct: 230 ALTRYSAGPNHIEDSLSATGPWGRFTSNDQTYILNHTGSFDGRG-----VGADSRNIANY 284

Query: 300 YDGTELKTDFKEERDGYNGYTTGLLKVPEDTLATAVKVNYDLSESVRANAQVQFSRNTAF 359
           ++  E+ TD     D YN     +L+      +     +Y+L++S+   +   +S   + 
Sbjct: 285 HN--EITTD-----DYYNSVDQMMLQQSSRNKSIFTTGSYNLTDSLTFKSTAMYSERDSN 337

Query: 360 RRTDAEGQDYNDAELYIDPITGLPGMIDAGSILANNPYIPAEIAATG-----GKSI-TWD 413
           R+                 I G P  + A S     P  P  I+ T      G+ I +W 
Sbjct: 338 RQ-----------------IAGYP--LQASS----QPQFPVAISGTSYYNPVGQDINSWF 374

Query: 414 RRFEEVGPVESDNERTTLRTWAGLQGDLFET----WTWDASVGYGQFEQRQRRSNEISIR 469
           RR  E+ P  +++   TL   A L+G +F+     W WD    Y +++  Q     I++ 
Sbjct: 375 RRTVEL-PRTTESNVKTLHFDAALEG-VFDVGSHGWNWDVGFNYNKYDVTQVSRGNINLL 432

Query: 470 RLRNALNAVYAADGVTIQCASEA-------ARAEG-CVPVNIFGEGSISKEGA-DYIRAN 520
            L+ AL   +      +QC + A       + A G C P NI G  S S   A  YI A 
Sbjct: 433 ALQKALGPSFLNAQGQVQCGTAASPLPLGTSNALGQCTPFNILGGPSASTPNALQYINAL 492

Query: 521 PYINTDITQFNALGYISGELFELPAGGVQSAFGMEYRRDTQAVDTDKAMRGDAITFNDVP 580
                          I+G LF+LPAG +  A G+E+R  +     D+       T     
Sbjct: 493 GQATQQSLSKQWTANITGGLFDLPAGELGLAAGVEHREISGYDYPDQLSSAGYTTDLAAQ 552

Query: 581 PFEGDVTVWEAFGEANLPLLRDMSFANKLDVDVSLRLADYSQKNIDLMSSYRTGILWEPI 640
             EG     EA+ E  +P+L+D+  A +L  DV+ R ++YS+      S +     W+PI
Sbjct: 553 ATEGRYQTNEAYLELLIPVLKDLPGAKELSFDVAARYSNYSRFGDTTNSKF--SFTWKPI 610

Query: 641 ANYALRANYSRSQRAPNITELISPPRGDYDSIRDICNGVTATSTGAGHDSCRLDPGIAVA 700
            +  +R  Y    RAP +++        +D+  D C+    +   AG  +     G+   
Sbjct: 611 DDLLVRGTYGTGFRAPTLSDTFGGGSQTFDTFTDPCDATFGSLGNAGVAARCAGEGLPAG 670

Query: 701 IASTGTF-------KAETGSKYSPNAGNENLTEETADTYTLGFTMAPAFLEGFNLAVDYY 753
              T T          +  + ++   GN  L  E + T T+G   +P +++G + ++D+Y
Sbjct: 671 FRQTDTAGNAVTRRDVQGNAPFNSGVGNAELEPEYSITRTVGMVYSPHWVQGLDFSLDWY 730

Query: 754 DIKVADAIGSLSNEDILAECYNSSNPYGAGNEYCQDITRD-TEGQITQVIQQELNLNDIV 812
            I +++ I SL+  D+L  CY +S        YC D  RD   GQ+T + +  +NL  + 
Sbjct: 731 RISISNIITSLTANDVLNNCYLNSLA-----SYCADYGRDAVTGQVTTLSRGNVNLGRLE 785

Query: 813 TRGIDFAMAYEWELADYGELSLNTNWTHVLEY-SSSYYGADGLVAEDYVGELTSGIFEDR 871
           T G +F + Y      YG+ ++N +  ++  Y S +  GA+   A  Y           R
Sbjct: 786 TEGYNFGVRYRMPETAYGKFAVNLDTNYLATYKSQAEAGAEWANAAGY-----WNFPRVR 840

Query: 872 GTLSLTWSNDDWRVRWSAKYKSAMVD 897
            TL L WS       W+ +Y     D
Sbjct: 841 ATLGLDWSLGALSANWNLRYYGGFRD 866