Pairwise Alignments

Query, 1007 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 986 a.a., TonB dependent receptor/TonB-dependent Receptor Plug Domain from Sphingomonas koreensis DSMZ 15582

 Score =  284 bits (727), Expect = 2e-80
 Identities = 252/873 (28%), Positives = 381/873 (43%), Gaps = 119/873 (13%)

Query: 6   LTLAIQASMFGIVPSVAWAAEPIEVKAVKENATRNETETADKNDGIEKVTVTGSRIKRDS 65
           L +A+ A+    VP+VA A +           +  E ETA +  G  ++ VTGSRI R  
Sbjct: 15  LRVALLATAICAVPAVAQAQD-----------SAAEPETAQEQPG--EIVVTGSRISRRD 61

Query: 66  FSLSTPLQGLDAKDIADSGIGSLADILVDQIPALAEGVSSTNSQSSVQNTGLSTIDLRNL 125
               TP + L A+ +   G  S+ D L  ++P+         + ++   TG  + DLR L
Sbjct: 62  VEAPTPTKVLGAEILEARGSSSIGDFL-GEVPSFRNTQGPQTNTAATLGTGQFSADLRAL 120

Query: 126 GTDRTLTLIDGRRVVSNSYSGNYVSLSTIPAAMVDKVEIITGGASAVYGSDAIAGVVNII 185
           G  RTLTL+D RR V ++ +G  V L+ IP  +VD+++++TGGASA YGSDA++GVVN++
Sbjct: 121 GVIRTLTLVDSRRFVPSAATGQ-VDLNLIPQILVDRIDVVTGGASAAYGSDAVSGVVNVL 179

Query: 186 TQQNKTGFEINARGGETTEGGGRETTVDAGYGADFNSDKGYIYASATYDKQHGLFATDRE 245
             +   G +  A  G +  G  RET     +GA F+  +G+I     Y K  G+  TD  
Sbjct: 180 LNKRLEGIKGEASMGISDRGDARETRAALAFGAPFSDGRGHIVIGGEYVKSKGV--TD-- 235

Query: 246 RALYESSFAYDKKQMCNTMNTADGYQCM---RDITPEDWR-----ERSNDIVGGRFKSNA 297
                 SFA     +        G       R +T  +         +N  VGG  +   
Sbjct: 236 -PFGRESFAEQPGLISYVGPRPAGVPSRVYERGVTFINMAYGGLITGANAGVGGALRGIQ 294

Query: 298 WWYDGTELKTDFKEERDGYNGYTTGLLKVPEDTLATAVKV-NYDLSESVRANAQVQFSRN 356
           +   GT +  ++      Y  Y  G       TLA+     N  L         V  +R 
Sbjct: 295 FGPGGTPIPFNY----GNYANYGAG------STLASNFTGGNKGLYPQDGWTLIVPTTRR 344

Query: 357 TAFRRTDAEGQDYNDAELYIDPITGLPGMID----------AGSILANNPYIPAEI---- 402
            AF   D E  D     ++++   G  G             A +IL +N ++ + I    
Sbjct: 345 VAFGHIDYEVTD--KLNVFVEASYGRSGGYGNSPPVRDQGAAATILRDNAFLHSSIRDIM 402

Query: 403 AATGGKSITWDRRFEEVGPVESDNERTTLRTWAGLQGDLFETWTWDASVGYGQFEQRQRR 462
                 S T  R + + GP++  NE TT R   G   D    W  D   GY Q+ +    
Sbjct: 403 VTNNIGSFTLGRPYNDFGPIKRANENTTERFVGGFDYDFGGGWKLD---GYYQYGRNVLT 459

Query: 463 SNEISIRRLRNALNAVYAAD-GVTIQCASEAAR----------------AEGCVPVNIFG 505
           +N   +R   N   AV A   G  + CA+  A                 A GCVP+N+FG
Sbjct: 460 ANVSGLRIENNFRFAVDAVRVGSQVVCAATQANGTVTATGEVLNRFNSAAAGCVPINLFG 519

Query: 506 EGSISKEGADYIRANPYINTDITQFNALGYISGELFELPAGGVQSAFGMEYRRDTQAVDT 565
           +GS S    DY+  + +      Q  A     GELF+LP G +  AFG E+R++     +
Sbjct: 520 QGSPSAAAIDYVTGDIFNQITTKQQVAALTAQGELFKLPGGPLAIAFGGEWRKEEATAIS 579

Query: 566 DKAMRGDAITFNDVPPFEGDVTVWEAFGEANLPLLRDMSFANKLDVDVSLRLADYSQKNI 625
           D   + +   +++  P+ G   V E F E   PLLRD+SFA+ L+++ ++R  DYS    
Sbjct: 580 DVISQANGFNYSNPKPYSGGYDVKEVFAEVVAPLLRDVSFAHHLELNGAIRYTDYSTSG- 638

Query: 626 DLMSSYRTGILWEPIANYALRANYSRSQRAPNITELISPPRGDYDSIRDICNGVTATSTG 685
             +++++ G ++ P  +   RA  SR  RAPN ++L +        +R+  +GVT   + 
Sbjct: 639 -GVTTWKLGAIYAPFPDLRFRATRSRDIRAPNNSDLYA-TTASLAQLRNPWSGVTTQIST 696

Query: 686 AGHDSCRLDPGIAVAIASTGTFKAETGSKYSPNAGNENLTEETADTYTLGFTMAPAFLEG 745
               S  L P                               E ADT+T+G    P F+ G
Sbjct: 697 VNQPSPTLKP-------------------------------EEADTWTVGAVFTPTFIPG 725

Query: 746 FNLAVDYYDIKVADAIGSLSNEDILAECY-NSSNPYGAGNEYCQDITRDTEG---QITQV 801
             L+ DYYDI +  AI S S + IL  C+  +  P+     +C  + R   G   Q+  V
Sbjct: 726 LTLSADYYDIDIGGAIASYSAQSILDNCFAETGTPF-----FCNFVNRTGTGGATQVNSV 780

Query: 802 IQQELNLNDIVTRGIDFAMAYEWELADYGELSL 834
             Q LN+  I TRG+D A  Y   +   GEL+L
Sbjct: 781 SVQLLNIAGIRTRGLDLAATYRTRIGS-GELTL 812