Pairwise Alignments

Query, 1007 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1060 a.a., TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain from Sphingomonas koreensis DSMZ 15582

 Score =  599 bits (1545), Expect = e-175
 Identities = 373/984 (37%), Positives = 534/984 (54%), Gaps = 65/984 (6%)

Query: 45   ADKNDGIEKVTVTGSRIKRDSFSLST-PLQGLDAKDIADSGIGSLADILVDQIPALAEGV 103
            +D+ D    V VTGSRI R   + S  P+  ++ +DI  SG   L+++L D  PA+   +
Sbjct: 121  SDEQDDAGDVIVTGSRIARQVVTDSAVPIVQINEEDIQSSGATELSEVLADY-PAVTPSL 179

Query: 104  SSTNSQSSVQNTGLSTIDLRNLGTDRTLTLIDGRRVVSNSYSGNYVSLSTIPAAMVDKVE 163
            +  NS S +   G S++ LR LG DRTLTLIDGRR VSN  + + VSLS+IPA  V++VE
Sbjct: 180  NLANSNSQINAAGTSSVSLRGLGADRTLTLIDGRRTVSNRITSSAVSLSSIPAMFVERVE 239

Query: 164  IITGGASAVYGSDAIAGVVNIITQQNKTGFEINARGGETTEGGGRETTVDAGYGADFNSD 223
            +ITGGASAVYGSDAIAGVVNIIT++   G  +  R G ++EG  +   +D   G     D
Sbjct: 240  VITGGASAVYGSDAIAGVVNIITRRKYDGIRVGGRAGISSEGDSQRLNLDLLVGQKLFDD 299

Query: 224  KGYIYASATYDKQHGLFATDRERALYESSFAYDKKQMCNTMNTADGYQCMRDITPEDWRE 283
            +  +   A+Y+K+ G+    R RAL   S AY      N +N  +       IT      
Sbjct: 300  RVSLVLGASYEKEDGVMGYQRARAL--DSVAYSLSADSNPLNQGE-----LGITRPS--- 349

Query: 284  RSNDIVGGRFKSNA------WWYDGTELKTDFKEERDGYNGYTTG---LLKVPEDTLATA 334
            +S+   GGRF S++      + YD     T F+       G+ T     +  P  +   A
Sbjct: 350  KSSSTPGGRFLSSSTAGGGYFVYDANG--TLFRSTSTAVYGWETRPDLQISAPRTSYLAA 407

Query: 335  VKVNYDLSESVRANAQVQFSR-NTAFRRTDAEGQDYNDAELYIDPITGLPGMIDAGSILA 393
             K+  DL   +    QVQ+S+  T+  R  AE   Y+  E + DP+   P ++  G I  
Sbjct: 408  GKITVDLGSDIEFFGQVQYSKVKTSAERGGAETAAYD--EEFGDPLA--PDVV--GRIAR 461

Query: 394  NNPYIPAEI-AATGGKSITWDRRFEEVGPVESDNERTTLRTWAGLQGDLFETWTWDASVG 452
            NNPY+P  I AA     I W RRF E+G     N+R T R W GL+G + E W W+ S G
Sbjct: 462  NNPYVPTAIRAAASSSGIQWSRRFNELGHYRILNDRETWRAWTGLRGKVGERWNWEISYG 521

Query: 453  YGQFEQRQRRSNEISIRRLRNALNAVY--AADG--VTIQCASEAARAEGCVPVNIFGEGS 508
            YG+F Q Q R N ++++ L+ A+NA +  AA G    ++C   AARA GCVPVN+FG  S
Sbjct: 522  YGRFHQEQNRVNLLNLQNLKYAINAEFDPAAPGDLSRVRCVDAAARAAGCVPVNLFGPNS 581

Query: 509  ISKEGADYIRANPYINTDITQFNALGYISGELFELPAGGVQSAFGMEYRRDTQAVDTDKA 568
            I+   A+YIRA+  ++  + Q    G++SG LFELPAG V  A G EYRRD Q   TD  
Sbjct: 582  ITSAAANYIRADLKLDGLMQQDVVQGFLSGALFELPAGPVSIALGGEYRRDWQRSVTDDT 641

Query: 569  MRGDAITFNDVPPFEGDVTVWEAFGEANLPLLRDMSFANKLDVDVSLRLADYSQKNIDLM 628
             R    + + +  +EGD+   EAF E  +P+ R+  FA+ L +D ++R  DY+ KN+  +
Sbjct: 642  TRRGFGSASFIAEYEGDIKAKEAFAEVKVPVFREQPFAHSLSLDAAVRYGDYNIKNVGSV 701

Query: 629  SSYRTGILWEPIANYALRANYSRSQRAPNITELISPPRGDYDSIRDICNGVTATSTGAGH 688
             SYR G  W P+ +   R  Y+R+QRAP +T L SP R D DS+ D+C+GVTAT+TG   
Sbjct: 702  LSYRFGGEWAPVRDIRFRGQYARAQRAPTVTNLYSPARDDSDSVVDLCSGVTATTTGTIA 761

Query: 689  DSCRLDPGIAVAIASTGTFKAETGSKYSPNAGNENLTEETADTYTLGFTMAPAFLEGFNL 748
             +CR   G+A  IA+ G F  +T S   P AGN +L EETADT + G  + P F+ G ++
Sbjct: 762  TNCRSIAGVAAEIAANGVFLQDTTSIEGPAAGNPDLKEETADTLSFGAVLTPRFIPGLSM 821

Query: 749  AVDYYDIKVADAIGSLSNEDILAECYNSSNPYG-AGNEYCQDITRDTEGQITQVIQQELN 807
             VDY+ IK+ D I SL   D+L EC    NP G   N +C +ITR+ EGQIT++I ++LN
Sbjct: 822  TVDYFRIKIRDVISSLDAVDLLRECL--GNPGGITNNFFCNEITRNAEGQITRIINRDLN 879

Query: 808  LNDIVTRGIDFAMAYEWE----LADYGELSLNTNWTHVLEYSSSYYGADGLVAEDYVGEL 863
            L   V  G D A+ Y ++    L+  G+  +   ++ + +Y + + G DG+   DY GE+
Sbjct: 880  LTQTVRSGADVAIDYRFDAPQWLSSKGKFDIRFLYSRLFDYYTVFDGVDGVRRTDYKGEI 939

Query: 864  TSGIFEDRGTLSLTWSNDDWRVRWSAKYKSAMVDSHDRVEEWNVLKAENQAKLDAGDASA 923
              G + + G   L + +   R+RW  +Y    VDS             N  ++ A  A A
Sbjct: 940  --GAWVNSGQAQLGYRDGGLRLRWKLRYTGDAVDS-------------NVRRIAAEKAGA 984

Query: 924  VANPETPEFLFYGSYITHDLSVSYTMDVSQAELRLYGGLRNIFDNQGPWVADGGDLIETG 983
                  P FL     + HD   S  +  +  + RLY G+ N F++  P++  G   +  G
Sbjct: 985  -----NPPFLHIEDRVRHDFYASVDIPSASKDFRLYAGVNNAFNSTSPFLPSG--TVSGG 1037

Query: 984  TGNYSSAYGGGVGRYAYLGAELKF 1007
            + N +  Y   +GRY Y+G E KF
Sbjct: 1038 SQNVAGEY-DVIGRYFYVGFEAKF 1060