Pairwise Alignments

Query, 574 a.a., DNA primase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 660 a.a., DNA primase from Pseudomonas sp. BP01

 Score =  437 bits (1125), Expect = e-127
 Identities = 221/421 (52%), Positives = 292/421 (69%), Gaps = 7/421 (1%)

Query: 3   IPRDFINELIARTDIVELIDRKVPLKKAGKNYSACCPFHSEKSPSFTVSRDKQFYHCFGC 62
           IP+ FI++LI R DIV+++  +V LKK GKNYSACCPFH EK+PSFTVS DKQFY+CFGC
Sbjct: 5   IPQSFIDDLINRLDIVDVVSSRVQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGC 64

Query: 63  GAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGT-GKRQDDGLSRDLYQLMEEAS 121
           GA GNA+ FVM++D LDF  A+E+LA   G+EVPREQG   ++        LY L++ AS
Sbjct: 65  GAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPLLDAAS 124

Query: 122 RFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRQNQDAQDKLL 181
            F++  LR H  ++  +DYL  RGLS +I   F +GFAP GWD LL     +   Q  ++
Sbjct: 125 EFYRQALRSHPTRKAAVDYLKGRGLSGEIARDFCLGFAPPGWDNLLKHLGADTLQQKVMI 184

Query: 182 TAGMLISN-DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFHKG 240
            AG+LI N +SGKRYDRFRDR+MFPIRD RGR+I FGGRVLGD  PKYLNSPETP+FHKG
Sbjct: 185 DAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDDKPKYLNSPETPVFHKG 244

Query: 241 NELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLGTSTTAEQFQLLLRSAK 300
            ELYGLYE ++ +R+ D++++VEGYMDV+ALAQ G+  AVA+LGT+T+ E  + L R   
Sbjct: 245 QELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVP 304

Query: 301 EVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDPDSMVRKIGKDPFE-QL 359
            V+ C+DGD+AG +AAWRALE+ L  L+ G + RF+FLP+ EDPDS+VR  G D F  ++
Sbjct: 305 SVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDSLVRAEGTDAFRARI 364

Query: 360 MESAITLPEFLFDTLATKFG----TDKGNLAKQAFGLIEKIQDTVLQNLLLENLAHKLGM 415
            + A  L ++ F+ L  +        K ++A  A  LIEKI    L+ L+   L    G+
Sbjct: 365 NQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGANLRQLMRNRLKEITGL 424

Query: 416 N 416
           +
Sbjct: 425 D 425