Pairwise Alignments

Query, 271 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 257 a.a., polyamine ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  189 bits (479), Expect = 7e-53
 Identities = 101/264 (38%), Positives = 158/264 (59%), Gaps = 9/264 (3%)

Query: 1   MKKLSFSSVMLWFGLLFLYAPMLILVIYSFNESKLVTVWGGFSPKWYGELFKDQQILDAV 60
           M++L  + V  W    FLY P+L++++YSFN SK  T W GF+  WY +L  +  ++DA 
Sbjct: 3   MRRLGMAWV--WLVYAFLYLPILVVIVYSFNASKYSTAWSGFTLDWYAKLLANTPLVDAA 60

Query: 61  WTSLRIAFYSSTMAVIIGTMAAFVMTRFKRSWAKLTLSNMITAPLVMPEVITGLSLLLLF 120
             SL +A  S+T+A ++G++AA  + R++    K+ L + I    V P+++ G+SLL+ F
Sbjct: 61  LNSLSVATLSATLATLLGSLAAMCLHRYRFPGRKV-LHSSIYVLTVSPDIVMGISLLIFF 119

Query: 121 VHMADLLGWPKERGMVTVWIAHSTFCAAYVAVVVSSRLRELDRSIEEAAMDLGATPLKTF 180
           + +        E G VT+ IAH+T    +V V V +RL E D  + EAA DLGA+    +
Sbjct: 120 IALR------MELGFVTLLIAHTTLGLPFVTVTVLARLAEFDEHLVEAARDLGASEAAAY 173

Query: 181 FLITVPMISPALVAGWLLSFSLSLDDLVISSFASGPGATTLPMVVFSSVRLGVSPKINAL 240
             I +P+  PA+ AGWLLSF+LS+DD++IS F +GP    LP+ ++S VRLGV P INAL
Sbjct: 174 RHIILPLTLPAVAAGWLLSFTLSMDDVLISFFVTGPSFEVLPLKIYSMVRLGVKPDINAL 233

Query: 241 ATLIILCVSLIAFLSWYMARRAEK 264
           + ++     ++  L+  +     K
Sbjct: 234 SAVMFGVTIVLVLLAQALTNMRRK 257