Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 352 a.a., Putrescine transport system permease protein PotH (TC 3.A.1.11.2) from Xanthomonas campestris pv. campestris strain 8004

 Score =  362 bits (930), Expect = e-105
 Identities = 177/287 (61%), Positives = 220/287 (76%), Gaps = 1/287 (0%)

Query: 13  RFWTISFPYAWLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYA-DDVLNIFLHLGNYL 71
           R+  I+ PY WLL+FFA+PF IV KIS +  A A+PPY   F YA D  +++ LHLGNYL
Sbjct: 62  RWGVIAAPYLWLLVFFAIPFLIVLKISFAERATAMPPYTPLFAYAADGAVSLKLHLGNYL 121

Query: 72  MLLDDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLVMLPSWTSF 131
            LL D  Y  AYLSS+K+A +ST   L+IGYPMAY IAR P   + V ++LV+LPSWTSF
Sbjct: 122 ALLRDSQYVAAYLSSIKIAAISTALALLIGYPMAYVIARLPLATRNVAMMLVVLPSWTSF 181

Query: 132 LIRVYAWMGILSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLPFMILPLYATL 191
           LIRVYAW+GIL   G++N +L+ LG+I +PLQ+L T IA YIG +Y YLPFM+LPLYA L
Sbjct: 182 LIRVYAWIGILDGNGLLNQALLALGVIEQPLQLLYTPIAAYIGFVYCYLPFMVLPLYANL 241

Query: 192 VKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGGPDS 251
           VK D  L+E A DLG+     F +IT PLS++G++AG MLV IPAVGEFVIPE+LGGP +
Sbjct: 242 VKHDSRLLEVAYDLGARPWQAFVRITLPLSRNGIVAGCMLVMIPAVGEFVIPEMLGGPGT 301

Query: 252 LMIGKVLWQEFFNNRDWPVASSLAIVMLVLLIIPITLFHRYQARSLE 298
           LMIG+VLW EFFNNRDWPVA+++A VMLVLL++PI +FHRYQ R LE
Sbjct: 302 LMIGRVLWGEFFNNRDWPVAAAVATVMLVLLLVPIVIFHRYQQRELE 348