Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

 Score =  210 bits (535), Expect = 3e-59
 Identities = 108/269 (40%), Positives = 163/269 (60%), Gaps = 13/269 (4%)

Query: 23  WLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDVLNIFLHLGNYLMLLDDPLYYTA 82
           WL+LF  +P  ++   S  T   A            +++       NY  LLD PLY   
Sbjct: 19  WLVLFVLIPNLMIIGTSFLTRDEA------------NLIKFAFTFENYTRLLD-PLYGKV 65

Query: 83  YLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLVMLPSWTSFLIRVYAWMGIL 142
            L S  MA+V+T+ CL+IGYP AY +A+ P +W+  +L L+++P WT+ LIR Y    +L
Sbjct: 66  MLHSFYMAIVATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVL 125

Query: 143 SNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEAA 202
              GI+N +LM LG+I  PL+I+ T  AV IG++Y  LPFMILPLY+ + KLD + IEAA
Sbjct: 126 GTQGILNQALMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEAA 185

Query: 203 SDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGGPDSLMIGKVLWQEF 262
            DLG+++  T  ++  PL+  G+I G +LV +PA+G F I +LLGG  +L+IG V+  + 
Sbjct: 186 RDLGANKFQTLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQV 245

Query: 263 FNNRDWPVASSLAIVMLVLLIIPITLFHR 291
            N RDWP  ++ +I + + + I +  ++R
Sbjct: 246 LNARDWPFGAATSIALTLAMAIMLYAYYR 274