Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 288 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  179 bits (454), Expect = 7e-50
 Identities = 102/270 (37%), Positives = 159/270 (58%), Gaps = 19/270 (7%)

Query: 23  WLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDVLNIFLHLGNYLMLLDDPLYYTA 82
           WL +F  LPF  +   +    A     Y+  F +A      F +L         P    A
Sbjct: 23  WLTVFLVLPFIAMLVFAFGERAPE-GGYQPAFTFAQ-----FANL---------PTRAAA 67

Query: 83  YLSSLKMALVSTIGCLIIGYPMAYAIA-RAPARWQTVLLLLVMLPSWTSFLIRVYAWMGI 141
           + ++L +A    + CL++ YP+AY +A +A  R++ +L+ LV++P WTS L+R YAWM I
Sbjct: 68  FWNTLMLAPAGALLCLVVAYPVAYYLAVKANPRYRLILVSLVVVPFWTSLLVRTYAWMYI 127

Query: 142 LSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEA 201
           L + GI  N L  +GI  E +++LNT  AV +GI+Y YLP MI+P+Y +L KLD  L+EA
Sbjct: 128 LGSRGI-PNLLSMIGI--EDVRMLNTPGAVLLGIVYGYLPLMIMPIYVSLEKLDRRLLEA 184

Query: 202 ASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGGPDSLMIGKVLWQE 261
           ++DLG   ++TF  +T PLS  GV+ G  LV I  +GE++IP+LLGG     IG  L   
Sbjct: 185 SADLGGKPVSTFLGVTLPLSLPGVMTGVALVTILLLGEYLIPQLLGGGKVFFIGNALVDL 244

Query: 262 FFNNRDWPVASSLAIVMLVLLIIPITLFHR 291
           F  +R+WP  S++A+ ++ ++++ + +  R
Sbjct: 245 FLQSRNWPFGSAIAVTLVAVVVVVLMVAMR 274