Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 304 a.a., ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  313 bits (801), Expect = 4e-90
 Identities = 155/284 (54%), Positives = 204/284 (71%), Gaps = 5/284 (1%)

Query: 20  PYAWLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDVLNI-----FLHLGNYLMLL 74
           PY W+LLFF +PF  V KISLS  AIA PPY   F  A     +      L   N+ ++L
Sbjct: 18  PYVWMLLFFLVPFGFVVKISLSQTAIAQPPYTPVFDLAAGWTALRAAFEALSADNFKLIL 77

Query: 75  DDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLVMLPSWTSFLIR 134
            D LY  +YL SL +A VST   L+IGYP+AYA+AR P RWQ + ++LV++P WTSFLIR
Sbjct: 78  GDHLYVVSYLRSLTVAAVSTATLLLIGYPIAYAMARLPRRWQPLAMMLVIVPFWTSFLIR 137

Query: 135 VYAWMGILSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLPFMILPLYATLVKL 194
           +YAW+ IL + G++N  L+ L I+S+P+  L+T+ A+Y+GI+Y+YLPFM+LPLYATL KL
Sbjct: 138 IYAWINILQHDGLLNQLLLALRIVSKPVVWLSTDTAMYVGIVYSYLPFMVLPLYATLAKL 197

Query: 195 DMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGGPDSLMI 254
             SL EAA+DLG+S    FW +TFPLS  G+ AG +L FIP VGEFVIP+LLGG  S MI
Sbjct: 198 PHSLSEAAADLGASPRQAFWLVTFPLSLPGIGAGVLLCFIPIVGEFVIPDLLGGSTSPMI 257

Query: 255 GKVLWQEFFNNRDWPVASSLAIVMLVLLIIPITLFHRYQARSLE 298
           G+ LW EFF NRDWPVAS+LA+++L +L++P+ ++ R Q R LE
Sbjct: 258 GQTLWLEFFTNRDWPVASALAVLLLGVLLLPLLIYERAQRRQLE 301