Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 324 a.a., putrescine/spermidine ABC transporter permease from Burkholderia phytofirmans PsJN

 Score =  337 bits (864), Expect = 2e-97
 Identities = 160/298 (53%), Positives = 221/298 (74%), Gaps = 2/298 (0%)

Query: 3   IKSKLKWL--KGRFWTISFPYAWLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDV 60
           +K +L  L   GR   I  P+ WL +FFALPF +V KIS +   + IPPY       D +
Sbjct: 24  LKKRLSMLVPSGRSTVIGVPFLWLTVFFALPFVLVLKISFADLRLGIPPYTDLVTVKDGM 83

Query: 61  LNIFLHLGNYLMLLDDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLL 120
           ++  + L +Y  LL D LY   Y+SSLKMA VST  CL+IGYP+AY IAR+    + +L+
Sbjct: 84  VHFAMQLSHYAFLLQDDLYVATYISSLKMAAVSTFFCLLIGYPIAYYIARSEPTKRNLLM 143

Query: 121 LLVMLPSWTSFLIRVYAWMGILSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYL 180
           + VMLP WTSFLIRVYAW+GIL + G++N++LM +G+I  PL++ +T+I VYIG++Y+YL
Sbjct: 144 MGVMLPFWTSFLIRVYAWIGILKDDGLLNHTLMAIGMIHSPLRLYHTDIGVYIGMVYSYL 203

Query: 181 PFMILPLYATLVKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEF 240
           PFM++PLYA LVK+D++L+EAA DLG      F +IT PLSK+G+IAGS+LVFIPAVGE+
Sbjct: 204 PFMVMPLYAHLVKMDLTLLEAAYDLGCKPWTAFTRITLPLSKNGIIAGSLLVFIPAVGEY 263

Query: 241 VIPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLVLLIIPITLFHRYQARSLE 298
           VIPELLGG D+LMIG+V+W EFFN+ DWP+AS++ + M++LL++P+ +F  YQ + LE
Sbjct: 264 VIPELLGGADTLMIGRVMWDEFFNDMDWPMASAVTVAMVLLLLVPMAVFQYYQVKELE 321