Pairwise Alignments

Query, 509 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  230 bits (587), Expect = 1e-64
 Identities = 148/419 (35%), Positives = 221/419 (52%), Gaps = 11/419 (2%)

Query: 83  DKLTGLINRV----GLKRTLASLMPITQG-TLVLIDIYRFRYVNDLLGFVFGDILLKQFA 137
           D LTGL NR+      ++ LAS     +G  L+L+D+  F+ +ND LG   GD LLK  A
Sbjct: 211 DPLTGLPNRLLFSDRTEQALASAQLHKRGCALLLLDLDHFKNINDSLGHNVGDELLKGVA 270

Query: 138 ERLTSLSLKPKLIARLNGDEFFLYYEQSLSQEQLLHLRGR----LQVPFNIKDTPVSVRL 193
           ER   L      +ARL GDEF +  E      Q   L  R    L+ P    D  + +  
Sbjct: 271 ERFRGLFAPGVTLARLGGDEFAVLVENCSQPGQAAALARRILDALKEPLRFDDHALFINA 330

Query: 194 QIGCLQLAQHHADVSNMLRRLDLALKKARST-RIAIACYSENDDIRQLRELKIIDSLPNG 252
            IG             +LR  D AL KA+S  R   A Y+E       + ++I   L   
Sbjct: 331 SIGISLFPGDALSAGQLLRNADSALFKAKSAGRDGYALYTEELTAHAQQRVEIAFELRRA 390

Query: 253 LQRNHLYMVYQPKQDVSSEGCTQVEALIRWEHEELGVISPGEFIPLAECAGMIDLVSHWA 312
           LQ+  L + YQP  D+++     VEAL+RWEH   G++SP EFIP+AE  G+I  V  W 
Sbjct: 391 LQQQELRVHYQPVHDLATSRLIGVEALVRWEHPTRGLVSPAEFIPIAERTGLIAQVDAWV 450

Query: 313 LEQVLQQQVKWRLAGISVC-VALNLSTRDLDSETLPHELDARLKHYQLPPECLMIEITES 371
           ++Q  +Q  +W+ AG+++  VA+N+S+R      L  ++   L    L P CL +E+TES
Sbjct: 451 MDQACRQMCQWQQAGVALSFVAVNVSSRLFARRELYDQVAQVLHDTGLDPGCLELEVTES 510

Query: 372 TLMADLNKAVDTLVQIRRLGIHLAIDDFGTGHSSLAYLKHLPANEVKIDKVFLQDLKPNQ 431
            +M D   A++ + ++R LG+ LAIDDFGTG+SSL  LK LP  ++KID+ F+  L  ++
Sbjct: 511 AVMDDPEVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDE 570

Query: 432 PSEYILEASVNIAKKLGYEVTVEGVETQEVRDLLVKMGVDRIQGLCYAKPMRAVELEMH 490
               I+   + +A  +G +V  EG+E +E    L+    +  QG  + +P+ A +L+ H
Sbjct: 571 DDAAIVRVIIALAHSMGMQVHAEGIEQREQAAFLLGQACELGQGYWFGRPVAAAQLDWH 629