Pairwise Alignments

Query, 509 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 651 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  214 bits (546), Expect = 6e-60
 Identities = 142/423 (33%), Positives = 217/423 (51%), Gaps = 12/423 (2%)

Query: 83  DKLTGLINRVGLKRTLASLMPIT-----QGTLVLIDIYRFRYVNDLLGFVFGDILLKQFA 137
           D LT L NR      L   + ++      G ++ +D+ RF+ VND LG   GD LL   A
Sbjct: 218 DPLTDLPNRTLFLARLEHALSLSAREGGSGAVLFLDLDRFKDVNDSLGHPTGDRLLCAVA 277

Query: 138 ERLTSLSLKPKLIARLNGDEFFLYYEQSLSQEQLL----HLRGRLQVPFNIKD-TPVSVR 192
           ERL     +   +ARL GDEF L  E + + E+       L  +L  PF + D + V V 
Sbjct: 278 ERLRPCLRESDTLARLGGDEFLLLLETAATPERAAVVAEKLLEQLAAPFRLDDRSEVYVG 337

Query: 193 LQIGCLQLAQHHADVSNMLRRLDLALKKARST-RIAIACYSENDDIRQLRELKIIDSLPN 251
             IG         + + +++  D AL +A++  R     YSE    +    L +  +L  
Sbjct: 338 ASIGICLYPADGDNATTLIQHADSALYQAKAAGRHTFRFYSEAQTRQADARLALEAALRR 397

Query: 252 GLQRNHLYMVYQPKQDVSSEGCTQVEALIRWEHEELGVISPGEFIPLAECAGMIDLVSHW 311
           GL++    + YQP+ D+ +     VEAL+RW      ++ P  FIPLAE  G+I  +  W
Sbjct: 398 GLEKEEFLLYYQPQVDLRTASLEGVEALVRWRLPGGELVPPARFIPLAEETGLILPLGEW 457

Query: 312 ALEQVLQQQVKWRLAGISVC-VALNLSTRDLDSETLPHELDARLKHYQLPPECLMIEITE 370
            L Q  +Q  +W   G+ +  VA+NLS+R      L   ++A L    L P  L +EITE
Sbjct: 458 VLRQACRQMQQWVARGLPIRRVAVNLSSRQFRQADLLQRINAILAETGLAPRYLELEITE 517

Query: 371 STLMADLNKAVDTLVQIRRLGIHLAIDDFGTGHSSLAYLKHLPANEVKIDKVFLQDLKPN 430
           S LM +  +    L  +  +GI LAIDDFGTG+SSL+YLK  P + +K+D+ F++D+  +
Sbjct: 518 SLLMDNSAQVDAKLEALEAMGIRLAIDDFGTGYSSLSYLKRFPLHTLKLDRSFIRDIADD 577

Query: 431 QPSEYILEASVNIAKKLGYEVTVEGVETQEVRDLLVKMGVDRIQGLCYAKPMRAVELEMH 490
             S  I+ + + + + L  ++  EGVET + R +L++ G    QG  ++ P+ A ELE  
Sbjct: 578 PVSSNIVASIIELGQHLDMDILAEGVETDQQRGILLQNGCRTCQGYLFSHPLPAEELEAR 637

Query: 491 WHR 493
           W R
Sbjct: 638 WLR 640