Pairwise Alignments

Query, 143 a.a., acetoin utilization protein AcuB, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 615 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 30/126 (23%), Positives = 64/126 (50%), Gaps = 10/126 (7%)

Query: 5   IADIMCTRVVTVEMDDRLTVAKDIFEQANFHHLLVLDEYKLEGVLSERDLLRAISPNLGN 64
           ++ +M  + + ++++  ++ A  +        +L++D  KL G+L++RDL   +     +
Sbjct: 152 VSSLMSKQPLCLDINASVSDAARLMRDNRVSSVLIIDNQKLAGILTDRDLRNRVLAESLD 211

Query: 65  GAETSKDLETLQKRIHQVMTRNPVTVAPYVSLDVASRTLLEHNIGCLPVLENGDLVGIVT 124
           G+            +HQ MT  P T++    +  A   + +HNI  LP+++ G  +G++T
Sbjct: 212 GSLP----------VHQAMTVTPTTLSANALVFEAMLLMSQHNIHHLPIMDEGHPIGVIT 261

Query: 125 WKDLLR 130
             D+LR
Sbjct: 262 STDILR 267



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 28  IFEQANFHHLLVLDEYKLEGVLSERDLLRAISPN---LGNGAETSKDLETLQKRIHQVMT 84
           +  Q N HHL ++DE    GV++  D+LR  S     L    E   DLE+L   IH V  
Sbjct: 239 LMSQHNIHHLPIMDEGHPIGVITSTDILRGQSSQPLLLIGEIERQHDLESL---IH-VSK 294

Query: 85  RNPVTVAPYVSLDVASRTL 103
           + P+ +   +S D  +  +
Sbjct: 295 QIPLLLQNLISADARAEEI 313



 Score = 32.0 bits (71), Expect = 2e-05
 Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 28  IFEQANFHHL--LVLDEYKLEGVLSERDLLRAISPNLGN-GAETSKDLETLQKRIHQVMT 84
           I E    +HL     ++ + E    +R   RA +  L + G   +K+L +   R+  +M+
Sbjct: 99  ILEDGLVYHLDPETFNQLRSESREFDRFFNRAFAKRLRHQGRFKAKELGSTN-RVSSLMS 157

Query: 85  RNPVTVAPYVSLDVASRTLLEHNIGCLPVLENGDLVGIVTWKDL 128
           + P+ +    S+  A+R + ++ +  + +++N  L GI+T +DL
Sbjct: 158 KQPLCLDINASVSDAARLMRDNRVSSVLIIDNQKLAGILTDRDL 201