Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 455 a.a., DNA repair protein RadA from Pseudomonas fluorescens FW300-N2E2

 Score =  576 bits (1484), Expect = e-169
 Identities = 281/454 (61%), Positives = 356/454 (78%), Gaps = 1/454 (0%)

Query: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGRGTKFAGYAGAGSSEV 60
           MAK K  Y C ECG  FP+W GQCS C  WNT+TE  + +      T   G+AG   +++
Sbjct: 1   MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQ-QAQI 59

Query: 61  KTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQM 120
           KTL ++ +  +PR  +  GELDRVLGGG+V GS +LIGG PG GKST+LLQTLC+LA +M
Sbjct: 60  KTLAEVSVEEIPRFSTASGELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRM 119

Query: 121 PALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVDSIQVMH 180
           PALYVTGEES QQVAMRA RLGLP ++LR+++ET +E I   A  E PKV+V+DSIQ + 
Sbjct: 120 PALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIATARLEKPKVMVIDSIQTIF 179

Query: 181 MSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCSVMF 240
              + S+PG VSQVRESA+ L R+AKQ G A+ +VGHVTK+G+LAGP+VLEH +D  + F
Sbjct: 180 TEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYF 239

Query: 241 EGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVMVV 300
           EG+SD R R LR+ KNRFGA+NELGVF MT+RGLKEV+NPSAIFL+R +EE  GS+VM  
Sbjct: 240 EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMAT 299

Query: 301 WEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVNVV 360
           WEGTRP+LVE+Q LVD+S ++NPRRV +G+D NRLAMLLAV+HRHGG+   DQDVF+NVV
Sbjct: 300 WEGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVV 359

Query: 361 GGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAKHG 420
           GGVKV ET++DL L+ A++SS R   LP DL+VFGEVGLSGE+RPVP+GQERL EAAKHG
Sbjct: 360 GGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAAKHG 419

Query: 421 FKRAIVPRANVPKKPPVGMEVVGVSKLSEALEAI 454
           FKRAIVP+ N PK+ P G++++ V++L +AL+A+
Sbjct: 420 FKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDAL 453