Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 505 a.a., DNA repair protein RadA from Synechocystis sp000284455 PCC 6803

 Score =  382 bits (980), Expect = e-110
 Identities = 210/477 (44%), Positives = 301/477 (63%), Gaps = 27/477 (5%)

Query: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGRGTKFAGYAGAGSSEV 60
           MAK +T +VC+ CG D  +W G+C  CHE+ ++ E  + A S G   +  G   + SS+V
Sbjct: 1   MAKARTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNHRSLGAQKSRSSKV 60

Query: 61  KT--------LDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQT 112
           KT          QI      R +S +GELDRVLGGGIVPG+ ILIGG PG GKSTLLLQ 
Sbjct: 61  KTGQPQAALTFSQIRQENQGRFLSGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQV 120

Query: 113 LCHLAEQMPA-LYVTGEESLQQVAMRAHRLGLPTN-----------------KLRMLSET 154
              LA ++P  LYV+ EES QQ+ +RA RLG+                     L +L ET
Sbjct: 121 AFQLATRLPRILYVSAEESGQQIKLRATRLGITQTVEPSQAQDGINNLAHDGNLFVLPET 180

Query: 155 SVEQICEIALQESPKVIVVDSIQVMHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIM 214
           +++ I        P+V ++DSIQ ++   ++S+PGSVSQVRE    L + AK+  I++ +
Sbjct: 181 NLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDHISLFI 240

Query: 215 VGHVTKDGSLAGPKVLEHCIDCSVMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGL 274
           VGHVTK+G++AGPKVLEH +D  + F+GD  + +R LRS KNRFGA  E+G+F M + GL
Sbjct: 241 VGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEMVQSGL 300

Query: 275 KEVANPSAIFLSRGEEESSGSLVMVVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANR 334
           +EV NPS +FL   EE  SG+ + V  EGTRPL+VELQ LV  ++ ++PRR   G+D NR
Sbjct: 301 QEVLNPSQLFLGSREEFMSGTAITVACEGTRPLVVELQALVSPTSYASPRRSTTGVDYNR 360

Query: 335 LAMLLAVMHRHGGLQMSDQDVFVNVVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVF 394
           L  +LAV+ +  G+ +S  D +++V GG++V E + DL + +A+V+SFR  ++   +++ 
Sbjct: 361 LLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVDLAMAIALVASFRDRVVDPTMIIL 420

Query: 395 GEVGLSGEIRPVPNGQERLVEAAKHGFKRAIVPRANVPKKPPVGMEVVGVSKLSEAL 451
           GE+GL G+IRPV   + RL EAAK GFK+AIVP+     +   G++++ V K+  A+
Sbjct: 421 GEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPKGQTGIE-SAGIKLIPVGKVFAAI 476