Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 454 a.a., DNA repair protein RadA from Phaeobacter inhibens DSM 17395

 Score =  388 bits (996), Expect = e-112
 Identities = 209/428 (48%), Positives = 276/428 (64%), Gaps = 11/428 (2%)

Query: 5   KTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGRGTKFAGYAGAGSSEVKTLD 64
           KT Y C+ CG  F +W G+C  C EWN+ITE + G +  G  +K       G    KT+ 
Sbjct: 3   KTTYSCSACGASFSKWSGRCDGCGEWNSITEDK-GLSKGGPASK-----SLGMRRGKTIP 56

Query: 65  QIDLNAL----PRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQ- 119
             DL       PR     GELDRVLGGG+VP SAIL+GG PG GKSTLLLQ     A+  
Sbjct: 57  LSDLATEEAPPPRTCCGVGELDRVLGGGLVPASAILVGGDPGIGKSTLLLQAAAQFAQSG 116

Query: 120 MPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVDSIQVM 179
           +  +YV+GEE+  QV MRA RLGL    +++ +ET++  I      E P++ ++DSIQ M
Sbjct: 117 LKTIYVSGEEASAQVRMRAQRLGLAEAPVKLAAETNLRDILTTLEAERPQLAIIDSIQTM 176

Query: 180 HMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCSVM 239
               V S+PGSVSQVR +A  LT FAK +G+++IMVGHVTK+G +AGP+V+EH +D  + 
Sbjct: 177 WADHVDSAPGSVSQVRAAAHELTTFAKTNGVSIIMVGHVTKEGQIAGPRVVEHMVDTVLY 236

Query: 240 FEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVMV 299
           FEG+   ++R LR+ KNRFG  +E+GVF MT  GL EV NPSA+FLS     S GS+V  
Sbjct: 237 FEGERGHQFRILRAVKNRFGPADEIGVFEMTGGGLSEVRNPSALFLSERGTPSPGSVVFS 296

Query: 300 VWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVNV 359
             EGTRP+LVE+Q LV  S  S PRR  VG D++RLAM+LAV+    G+  +  DV++NV
Sbjct: 297 GIEGTRPVLVEMQALVAPSPHSQPRRAVVGWDSSRLAMILAVLEARCGIPFAGLDVYLNV 356

Query: 360 VGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAKH 419
            GG+K++E +ADL +  A++S+     LP+D VVFGE+ LSG +RP P  + RL EA K 
Sbjct: 357 AGGMKISEPAADLAVAAALLSAREDTALPADTVVFGEISLSGALRPAPQTENRLKEAQKL 416

Query: 420 GFKRAIVP 427
           GF  AI P
Sbjct: 417 GFTAAIAP 424