Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 458 a.a., DNA repair protein RadA from Pedobacter sp. GW460-11-11-14-LB5

 Score =  375 bits (964), Expect = e-108
 Identities = 199/457 (43%), Positives = 291/457 (63%), Gaps = 4/457 (0%)

Query: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGRGTKFAGYAGAGSSEV 60
           MAK+K+A+ C  CG +  +W G+C +C++WNT  E  +  +S    T  +  +    S+ 
Sbjct: 1   MAKSKSAFFCQSCGYESAKWLGKCPSCNQWNTFVEEIVEKSSAAVPTWKSDTSSRKLSKP 60

Query: 61  KTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLAEQM 120
             +D+I  +   RI++   ELDRVLGGG+V GS +LIGG PG GKSTL+LQ   +L  + 
Sbjct: 61  SKVDEIQSSTERRILTGDKELDRVLGGGLVEGSLVLIGGEPGIGKSTLMLQLALNLKGKK 120

Query: 121 PALYVTGEESLQQVAMRAHRLG-LPTNKLRMLSETSVEQICEIALQESPKVIVVDSIQVM 179
             LY++GEES QQ+ MRA R+   P++   +L+ETS + I +      P+++VVDSIQ +
Sbjct: 121 -LLYISGEESEQQIKMRAERIQESPSSNCYILTETSTQNIFKQIEILEPEILVVDSIQTL 179

Query: 180 HMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCSVM 239
           H + + S+PGSVSQVRE  + L RFAK+ G+ V ++GH+TKDG++AGPK+LEH +D  + 
Sbjct: 180 HSAHIDSTPGSVSQVRECTAELLRFAKETGVPVFLIGHITKDGAIAGPKILEHMVDTVLQ 239

Query: 240 FEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLVMV 299
           FEGD    YR LRS KNRFGA  ELG++ M   GL+EV+NPS I LS+ +EE SG  +  
Sbjct: 240 FEGDRHHVYRILRSIKNRFGAAAELGIYEMQGSGLREVSNPSEILLSQRDEELSGIAIAA 299

Query: 300 VWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVNV 359
             EG RP+L+E Q LV ++A   P+R A G D  R+ MLLAV+ +  G ++S QDVF+N+
Sbjct: 300 TLEGARPMLIETQALVSSAAYGTPQRSATGFDTKRMNMLLAVLEKRCGFRLSTQDVFLNI 359

Query: 360 VGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAAKH 419
            GG++V + + DL +L+A++SS +   + S      EVGLSGEIR V   ++R+ EA K 
Sbjct: 360 AGGIRVEDPAIDLAILIAIISSHQDIAVSSKNCFAAEVGLSGEIRAVNRIEQRIAEADKL 419

Query: 420 GFKRAIVPRANVP--KKPPVGMEVVGVSKLSEALEAI 454
           GF+   + + N+         +E+  VSK+ E    +
Sbjct: 420 GFETIYISKYNLKGIATEKYNLEIKAVSKIEEVFSLV 456