Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase J (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 251 a.a., ribosomal RNA large subunit methyltransferase J from Phaeobacter inhibens DSM 17395

 Score =  142 bits (357), Expect = 7e-39
 Identities = 85/215 (39%), Positives = 119/215 (55%), Gaps = 9/215 (4%)

Query: 2   SGKKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAA 61
           + + R  SS RW+    +D YVK AQ  G R RAA+K+ E+  K + +  G  VVDLG A
Sbjct: 29  TARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKFRFLINGARVVDLGCA 88

Query: 62  PGGWSQVAVKLV---GDK-----GKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRV 113
           PGGW+QVAVK +   G+K     G++I  D+  ++P+ G +F Q DF ++   + +   +
Sbjct: 89  PGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPLAGAEFHQLDFMDDGADDKVKEWL 148

Query: 114 GADKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDE 173
           G  K DVV+SDMA   SG    D  R + L E A      VL   G+F  KV  G    E
Sbjct: 149 GG-KADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEDGGTFVAKVLAGGAEGE 207

Query: 174 YMKAVKEAFKVVKTRKPDSSRARSREVYLVATGYK 208
             K +K+ F  V   KP SSR+ S E ++VATG++
Sbjct: 208 LQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFR 242