Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase J (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 201 a.a., ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  134 bits (338), Expect = 9e-37
 Identities = 77/197 (39%), Positives = 112/197 (56%), Gaps = 5/197 (2%)

Query: 15  LEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPGGWSQVAVKLVG 74
           ++ + DHY   A++    +R+ +KL+E+  + +L R GM V+DLGAAPG WS  A + VG
Sbjct: 1   MKTYRDHYFLKAKQENYPARSIYKLKEIDNRFKLFRQGMKVLDLGAAPGSWSLGAAERVG 60

Query: 75  DKGKVIACDILPMDPIV--GVDFLQGD-FREEKVLEALLTRVGADKVDVVLSDMAPNMSG 131
            KG+V+ACD+   D      V F+Q D F   +  E  L  +G     VV+SDMAP  +G
Sbjct: 61  PKGRVLACDLQTTDTQFPPNVTFMQEDVFNRSEAFEDALAAMGP--FHVVISDMAPRTTG 118

Query: 132 SDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVKEAFKVVKTRKPD 191
           +   DQ R++ L   AL +    L   GSF VK+F G    + + A++  F+ VKT KP 
Sbjct: 119 TRFTDQARSLELCIEALAVADHCLIKGGSFVVKIFMGPDVKQLLDALRARFETVKTFKPK 178

Query: 192 SSRARSREVYLVATGYK 208
           SSR  S+E + V  GY+
Sbjct: 179 SSRVESKETFYVCLGYR 195