Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase J (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 257 a.a., ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  137 bits (344), Expect = 2e-37
 Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 9/215 (4%)

Query: 2   SGKKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAA 61
           + + R  SS  W+    +D YV+ A++ G R RAAFK+ E+ ++ + + PG  VVDLG A
Sbjct: 35  TARGRKLSSTLWLERQLNDPYVQKAKREGYRGRAAFKILEIDERFRFLVPGARVVDLGCA 94

Query: 62  PGGWSQVAVKLV---GDK-----GKVIACDILPMDPIVGVDFLQGDFREEKVLEALLTRV 113
           PGGW QVAV+ V   G+K     G+V+  D+  +DP+ G +    DF E+     +   +
Sbjct: 95  PGGWCQVAVRRVNALGEKSGKAQGRVLGVDLKEIDPVPGAETHVLDFMEDGADAQVKAWL 154

Query: 114 GADKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDE 173
           G  K DVV+SDMA   SG    D  R + L E A  +   VL   G+F  KV  G    E
Sbjct: 155 GG-KADVVMSDMAAASSGHKQTDHLRIVALCEAAAHLAFDVLEEGGTFVAKVLAGGAERE 213

Query: 174 YMKAVKEAFKVVKTRKPDSSRARSREVYLVATGYK 208
               +K AF  V   KPD+SR+ S E ++VATG++
Sbjct: 214 LQTLLKRAFTKVINVKPDASRSDSSEKFVVATGFR 248