Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase J (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 221 a.a., RlmE family RNA methyltransferase from Ralstonia sp. UNC404CL21Col

 Score =  179 bits (455), Expect = 3e-50
 Identities = 94/209 (44%), Positives = 130/209 (62%), Gaps = 13/209 (6%)

Query: 13  WMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPGGWSQ-VAVK 71
           W+ +H +D YVKLAQ+ G R+RAA+KL+E+ ++D+LI+PG  +VDLGAAPG WSQ V  K
Sbjct: 10  WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNK 69

Query: 72  LVGDK--------GKVIACDILPMDPIVGVDFLQGDFREEKVL----EALLTRVGADKVD 119
           L            G ++A DILPM+ I  V F+QGDFRE+ V     E +L   G  KVD
Sbjct: 70  LAASPRAKDGRIDGAIVAIDILPMEAIADVTFIQGDFREDDVFRQLEEIVLEATGGGKVD 129

Query: 120 VVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVK 179
           +VLSDMAPN+SG    D  R  ++ ELA++     L P G+  +K F G G+ + ++  K
Sbjct: 130 LVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFHGSGYSQIVEMFK 189

Query: 180 EAFKVVKTRKPDSSRARSREVYLVATGYK 208
             FK+V  RKP +SR +S E +L+    K
Sbjct: 190 RHFKIVAPRKPKASRDKSSETFLLGRQLK 218