Pairwise Alignments

Query, 272 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 267 a.a., Nikel transport family protein NikM from Xanthomonas campestris pv. campestris strain 8004

 Score =  157 bits (396), Expect = 3e-43
 Identities = 92/246 (37%), Positives = 139/246 (56%), Gaps = 9/246 (3%)

Query: 3   LRFVALVSALCISPFASSHDRWILPSHYNVSAESNEAVWITSDVSASNQVFMVDK-PVTA 61
           L  +AL++AL ++  A  H  W+LPS    +  + EA WIT D + SN +F  +  P+  
Sbjct: 5   LVLIALLAALPVTALA--HKAWLLPSQ---TVLAGEAPWITVDAAVSNDLFYFNHVPLRL 59

Query: 62  SDVKVYLPDGKPSSPSSSYTGGRKSVFDVQLLQDGTYKFEKEVTPRYFSVYKVKGKEEVV 121
            ++ +  PDG    P +  TG  +SVFD+QL Q GTYK         F+ +K  GK +  
Sbjct: 60  DNLTITAPDGSALKPENPATGKYRSVFDLQLTQPGTYKLSI-TNAGLFASWKEDGKPK-- 116

Query: 122 RSRLDKKATAAVMPKDAYDLKGSLTVARVETYVTRNKPTDKVLAPKGEYLELVPITHPAD 181
           R R ++ + A  +PK+A +L+ S ++ RVET+VTR  PT  V  P G+ +EL+P+THP D
Sbjct: 117 RWRGNETSFATEVPKNAQELQVSQSLNRVETFVTRGAPTTTVFKPSGKGIELIPVTHPND 176

Query: 182 IVENEPATLQFVYDGKPVEGVSVAIMKDGSLYRNKPEEISLTSDKEGKVAMTLPAAGRYL 241
           +V  E A      DGKP  G+ + I++ G+ YR+   EI L +D +G  ++T P  G Y 
Sbjct: 177 LVAGEAAQFTLQLDGKPAAGLEIEIVRGGTRYRDAQNEIKLKTDAKGGFSVTWPEPGMYW 236

Query: 242 LHASIE 247
           L  + E
Sbjct: 237 LETTAE 242