Pairwise Alignments

Query, 390 a.a., D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 391 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

 Score =  540 bits (1390), Expect = e-158
 Identities = 267/391 (68%), Positives = 318/391 (81%), Gaps = 5/391 (1%)

Query: 4   VKSPIKTLLLISSVSLPVYA-----AQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYE 58
           +K  I   +L SS++L +       A PIVTPDAP +AAK YVLMDY+SG+++AE+    
Sbjct: 1   MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60

Query: 59  SLNPASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSD 118
            L+PASLTKMMTSYVIGQE+K GN+S +DDV ISKNAW+KNF DSSKMF+EVG TVKVSD
Sbjct: 61  KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120

Query: 119 LNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSENHKTT 178
           LNRGIIIQSGNDACVAMAEH+AGTE AFVD+MN+W+  LGM++S+F NSHGLD  N  +T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180

Query: 179 AYDMALLGAALIRDVPEEYRIYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAG 238
            YD+ALLG ALIRDVPEEY IYSE+ +T+NGI QYNRNGLLWD SMNVDGIKTGHTSGAG
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240

Query: 239 YNLVASATKDGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIW 298
           YNLV+SAT+  MRL++VVMGT +E ARKAESKKLL+YGFRFFETV P+KAG++FV + IW
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300

Query: 299 YGDKSTVDLGVATDTPITVSRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGKDIA 358
            GDK T+ LGV  DT +T+ RG+AKDL A+F L K L APLKKG+ VG LY+QL G DIA
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQLKAPLKKGDIVGTLYYQLAGNDIA 360

Query: 359 QFPLVTLQEVNEGSWFSKLVDYFKQLFSGWF 389
           Q+PL+ L++V EGS FS+L DY   LF  WF
Sbjct: 361 QYPLLALEDVQEGSLFSRLWDYLVLLFKSWF 391