Pairwise Alignments

Query, 308 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 357 a.a., Membrane protein, putative from Xanthomonas campestris pv. campestris strain 8004

 Score =  306 bits (783), Expect = 6e-88
 Identities = 173/320 (54%), Positives = 217/320 (67%), Gaps = 26/320 (8%)

Query: 1   MAGASLLTLLDDIASILDDVALMSKVAAKKTAGVLGDDLALNAQQVTGVSADRELPVVWA 60
           MAGASL TLLDDIA++LDDV++++KVAAKKTAGVLGDDLALNAQQVTGV+ADRELPVVWA
Sbjct: 30  MAGASLFTLLDDIATLLDDVSILTKVAAKKTAGVLGDDLALNAQQVTGVTADRELPVVWA 89

Query: 61  VALGSFRNKLILVPAAMLISAFIPW---------AVTPLLMFGGLFLCFEGFEKLHHSYS 111
           VA GS  NK+ILVPAA+ ISA   W          V PL+M GG +LCFEG EKL H + 
Sbjct: 90  VAKGSLVNKVILVPAALAISALEAWLRGRGYNVPLVMPLMMIGGAYLCFEGVEKLAHKFL 149

Query: 112 HRKD----KHSEQAEPDVADISDLAAYEKEKVQGAIRTDFVLSAEIIAITLGIVADKSLS 167
           H ++    +H+E+      +  D+ A EK+KV+GAIRTDF+LSAEII ++LG+VA  S  
Sbjct: 150 HSEEEDAQRHAERTRVLADEAVDVVALEKDKVKGAIRTDFILSAEIIVLSLGVVAGVSFG 209

Query: 168 TQFFTLAVIGIVMTVGVYGLVAAIVKMDDAGLYLSQRQGESSFTRFNRKVGFGLLSAAPL 227
            Q   L  I + MT+GVYGLVA IVK+DD GLYLS++    +       +G G+L AAP 
Sbjct: 210 QQVAVLVAIALAMTIGVYGLVAGIVKLDDLGLYLSKKGAALA------ALGRGILVAAPW 263

Query: 228 LMKSLTIIGTAAMFMVGGGILTHGLHWVSEQIHHAEQWVSAIAVVGPVLGLLTPSVLNAF 287
           LMK L++ GT AMF+VGGGIL H +      +HH    V  +A     LG L  ++ N  
Sbjct: 264 LMKFLSVAGTLAMFLVGGGILVHNI----PTLHHL---VVDLAKASGSLGWLVEALGNML 316

Query: 288 FGIAAGAVAVLLMTGIQKLR 307
            G+ AGAV +  +TG QKLR
Sbjct: 317 VGVVAGAVVLAAVTGFQKLR 336