Pairwise Alignments

Query, 308 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 313 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score =  362 bits (929), Expect = e-105
 Identities = 189/308 (61%), Positives = 230/308 (74%), Gaps = 1/308 (0%)

Query: 1   MAGASLLTLLDDIASILDDVALMSKVAAKKTAGVLGDDLALNAQQVTGVSADRELPVVWA 60
           MAG++   L+DDIA++LDDV+LM+KVAAKKTAGVLGDDLALNAQQV GV A+RELPVVWA
Sbjct: 1   MAGSAFFALIDDIATVLDDVSLMTKVAAKKTAGVLGDDLALNAQQVAGVRAERELPVVWA 60

Query: 61  VALGSFRNKLILVPAAMLISAFIPWAVTPLLMFGGLFLCFEGFEKLHHSYSHRKDKHSEQ 120
           VA GS +NK ILVPAA+ ISAFIPWAVTPLLM GG FLCFEGFEKL H Y    ++H E 
Sbjct: 61  VAKGSLKNKAILVPAALAISAFIPWAVTPLLMLGGAFLCFEGFEKLAHKYLPHDEEHHEV 120

Query: 121 AEPDVADISDLAAYEKEKVQGAIRTDFVLSAEIIAITLGIVADKSLSTQFFTLAVIGIVM 180
           A     DI  L  YE+EK++ A+RTDF+LSAEIIAITLG VA  SL  Q   L  I ++M
Sbjct: 121 AARAPEDIDPLV-YEQEKIKDAVRTDFILSAEIIAITLGTVAGASLQQQITVLVGIALIM 179

Query: 181 TVGVYGLVAAIVKMDDAGLYLSQRQGESSFTRFNRKVGFGLLSAAPLLMKSLTIIGTAAM 240
           T GVYGLVA IVK+DD GLYL Q    S++ R    +G  +L+AAP +M+SL++IGT AM
Sbjct: 180 TAGVYGLVAGIVKLDDGGLYLVQHASASAWGRIKAGIGRAVLAAAPKMMRSLSVIGTIAM 239

Query: 241 FMVGGGILTHGLHWVSEQIHHAEQWVSAIAVVGPVLGLLTPSVLNAFFGIAAGAVAVLLM 300
           FMVGGGILTHGL +    I  A   V  +AV+GPVLG + P+VLNA FG+ AGAV ++++
Sbjct: 240 FMVGGGILTHGLPFAHHAIEAAAVAVEGVAVIGPVLGAIAPAVLNALFGVVAGAVVLVVV 299

Query: 301 TGIQKLRS 308
              Q++ S
Sbjct: 300 KLAQRVLS 307