Pairwise Alignments

Query, 396 a.a., hypothetical SAM-dependent methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 404 a.a., ribosomal RNA large subunit methyltransferase I from Phaeobacter inhibens DSM 17395

 Score =  202 bits (514), Expect = 1e-56
 Identities = 141/397 (35%), Positives = 198/397 (49%), Gaps = 10/397 (2%)

Query: 4   RIKLKP-GREKSLERRHPWVFSNGIHNVKG--KPEPGQTVDVVAHDGHW-LGRGAWSGES 59
           R+KLKP    ++L    PWV++N +   +   K  PG T+ V+  DG   +G  A + ES
Sbjct: 12  RVKLKPKANARALRHGFPWVYANELVTDRRTRKLAPG-TLAVLEDDGMTSMGLVAINPES 70

Query: 60  QIQVRVWTFDREEEIDREFFKRRILRAQAGRDDLIREQGLTGYRLIAAESDGLPGITIDK 119
           +I  R+   D   EI++++F+ R+ RA A R+ L        YRL  AESDGLPG+ ID+
Sbjct: 71  KIIARMLDTDPAAEINQDWFETRLSRALALREQLY---DAPYYRLAHAESDGLPGVVIDR 127

Query: 120 YANVLVCQLLSMGADVWRDTIVDVLAELYPDCAIYERSDVDSRKKEGLASTMGLLHGTLP 179
           + +  V Q  +  A+   D + D L  +     + + +   +R  EGL      L GT P
Sbjct: 128 FGDTCVVQPNAAWAEAHLDALTDALVAVTGVTTVLKNASGRARSLEGLDDVSTTLRGTTP 187

Query: 180 EMPLIIEENGIKIAVDVTKGHKTGFYLDQRDNRAIAARFVK-GKSVLNCFCYTGTFGLYA 238
           E P+ +  NG     D+T G KTG + DQRDN A AA+ VK G  VL+ F + G FGL  
Sbjct: 188 EAPVQVTMNGATYMADLTGGQKTGLFYDQRDNHAFAAKLVKPGAKVLDVFSHVGGFGLAM 247

Query: 239 AKAGAASIENVDVSSLALDTARLNMRVNGLSDDNVHYNEADVFKLLRQYRDEGKTFDVIV 298
             AGAA    VD S+ ALD AR     +  + D     + D F++L Q  +EG  FDV++
Sbjct: 248 LAAGAAEATCVDGSAPALDLAREGAAASDFA-DRFAARQGDAFEVLTQLAEEGVQFDVVI 306

Query: 299 LDPPKFADNKSQLNGACRGYKDINMIALQLLNPGGVLLTFSCSGLMPADLFQKIVADAAL 358
            DPP FA +K  L    R Y+ I  +A  L+ PGG L   SCS       F+   A    
Sbjct: 307 CDPPAFAPSKQALEAGLRAYERIAKLAAPLVAPGGCLGLCSCSHAADLSRFRNASARGIG 366

Query: 359 DAKREIQFIERLSQASDHPIGSAFPEGFYLKGLVARV 395
              R  Q +      +DHP      E  YLK +  R+
Sbjct: 367 RGGRRSQLLHTGYAGADHPQLPQLAESGYLKAVFFRL 403