Pairwise Alignments

Query, 362 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  101 bits (252), Expect = 6e-26
 Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 8/214 (3%)

Query: 39  NEAMQQQSRQNTDLYSDVIACQNQGGEMLNAVRDGIASSAEILTEEKESLSELDKIFDQT 98
           N   Q  +   T   + V     +   ++ AV +  AS  E+ +E  +  +   +  +Q 
Sbjct: 503 NSHTQTITHNMTGTRNSVSEQHERTDSVVTAVNEMSASITEV-SEFAQRAATFVQEANQK 561

Query: 99  RVAIVNLGNRA----TYINKQATSSMQAVTELNSTTSSINQFVAAIQGISEQTNLLALNA 154
               V++GN      T IN+Q  S+++A+  LN  + SI   +  IQ I+EQTNLLALNA
Sbjct: 562 GHGGVSVGNELARDMTSINQQMASAVEAIARLNHESQSIASVLDVIQAIAEQTNLLALNA 621

Query: 155 AIEAARAGEAGRGFAVVADEVRQLASKAHEASSQIEKLVKQIVTQASNIKEIVHNNQNS- 213
           AIEAARAGE GRGFAVVADEVR LA+K   ++ +I   + ++  +  ++   +    N+ 
Sbjct: 622 AIEAARAGEQGRGFAVVADEVRNLAAKTQTSTEEIRTKIDRLQKETQSVVNCIEEANNTV 681

Query: 214 --ALDVASSSTQIGQVVEDVLQRSNNMQQVIHNA 245
              +    S+T + + + D+L   N M   I  A
Sbjct: 682 VRGVATCHSNTDMLKQIVDMLNELNEMNIQIATA 715



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 23/168 (13%)

Query: 86  ESLSELDKIFDQTRVAIVNLGNRATYINKQATSSMQAVTELNSTTSSINQFVAAIQGISE 145
           E+L+++ K+ D+  + ++        +     +++ A    N  +  I   ++ IQ +S 
Sbjct: 404 EALADIAKLSDELIMKVL-----IAIVIGAVIATLAAWMVGNGISKPIRDSISQIQRMSR 458

Query: 146 QTNLLALNAAIEAARAGEAGRGFAVVADEVRQLASKAHEASSQIEKLVKQIVTQA----S 201
             +L          R  E G      +DE+RQLA   +   S ++  + Q         S
Sbjct: 459 DNDL--------TVRLSEQG------SDEIRQLAQALNRMLSHLQDTICQFAHTTDKLNS 504

Query: 202 NIKEIVHNNQNSALDVASSSTQIGQVVEDVLQRSNNMQQVIHNAATAS 249
           + + I HN   +   V+    +   VV  V + S ++ +V   A  A+
Sbjct: 505 HTQTITHNMTGTRNSVSEQHERTDSVVTAVNEMSASITEVSEFAQRAA 552