Pairwise Alignments

Query, 362 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  109 bits (272), Expect = 2e-28
 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 31  ELKNMARENEAMQQQSRQNTDLYSD-VIACQNQGGEMLNAVRDGIASSAEILTEEKESLS 89
           +L +   E  A+ +Q+ Q   +  + V+       EM + V + +A + E+ ++     S
Sbjct: 274 QLAHAVDEVSAVSEQTSQGMQIQQEEVMQIATAMAEMKSTVAE-VARNTEVASDASRDSS 332

Query: 90  ELDKIFDQTRVAIVNLGNRATYINKQATSSMQAVTELNSTTSSINQFVAAIQGISEQTNL 149
           +   +  Q   A+    +   ++N++   + Q V EL S    IN  V  I  I+EQTNL
Sbjct: 333 QHANVGSQQMRAV---NDSIQHVNQEIGRTEQRVLELESQAQQINMVVDVISNIAEQTNL 389

Query: 150 LALNAAIEAARAGEAGRGFAVVADEVRQLASKAHEASSQIEKLVKQIVTQASNIKEIVHN 209
           LALNAAIEAARAGE GRGFAVVADEVR LA K  +++  I ++++ +   A   +E  +N
Sbjct: 390 LALNAAIEAARAGEQGRGFAVVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNN 449

Query: 210 NQNSALDVASSSTQIGQVVEDVLQRSNNMQQVIHNAATA 248
           ++         S +  Q +E +  +S+ +  +    A+A
Sbjct: 450 SRELINHCVEQSQETQQAIEQIRHQSSQIADMTIQIASA 488



 Score = 30.8 bits (68), Expect = 9e-05
 Identities = 52/256 (20%), Positives = 99/256 (38%), Gaps = 24/256 (9%)

Query: 39  NEAMQQQSRQNTD-LYSDVIACQNQGGEMLNAVRDGIASSAEILTEEKESLSELDKIFDQ 97
           NE ++Q    N D L  ++I  Q      L        +  E+L   K +LS +D    +
Sbjct: 124 NEYLRQLGSFNNDILQKEMIKAQQDLQRSLPTFEKLETAIDELL---KLNLSYVDNNRSE 180

Query: 98  TRVAIVNLGNRATYINKQATSSMQAVTEL--NSTTSSINQFVAAIQGISEQTNLLALNAA 155
               I N+   +        + M AVT L  N   S + Q V     I+E      L   
Sbjct: 181 LTELIDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEGN----LAHR 236

Query: 156 IEAARAGEAGRGFAVVADEVRQLASKAHEASSQIEKLVKQIVTQASN----IKEIVHNNQ 211
           ++    G          DE+ +LA    +  + +  +V++I+T A+     + E+   ++
Sbjct: 237 LDRKTIGH---------DELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSE 287

Query: 212 NSALDVASSSTQIGQVVEDVLQRSNNMQQVIHNAATASFLNTTKLDHA-VWKSNVYQLIE 270
            ++  +     ++ Q+   + +  + + +V  N   AS  +     HA V    +  + +
Sbjct: 288 QTSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVND 347

Query: 271 KNQHSHGVNSHTECRL 286
             QH +     TE R+
Sbjct: 348 SIQHVNQEIGRTEQRV 363