Pairwise Alignments

Query, 362 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 587 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  110 bits (276), Expect = 7e-29
 Identities = 64/188 (34%), Positives = 106/188 (56%), Gaps = 3/188 (1%)

Query: 64  GEMLNAVRDGIASSAEILTEEK---ESLSELDKIFDQTRVAIVNLGNRATYINKQATSSM 120
           G M  +V+  +++ +EI        + +++  +  +Q R  +V        ++     S 
Sbjct: 342 GLMATSVQQMVSTISEISESTNIAVDGVNQAARNAEQGRSVVVTTVKNIDLLSSTLQKSQ 401

Query: 121 QAVTELNSTTSSINQFVAAIQGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRQLAS 180
            ++  LN+    I   V+ IQGI+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA+
Sbjct: 402 HSIGSLNAFVEKIGGAVSIIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAT 461

Query: 181 KAHEASSQIEKLVKQIVTQASNIKEIVHNNQNSALDVASSSTQIGQVVEDVLQRSNNMQQ 240
           + H+++ +I ++V  I +Q S + + +    N   +  S+S Q+ + ++ +L+  + +Q 
Sbjct: 462 RTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASRQLDESLQQILRDMHTIQD 521

Query: 241 VIHNAATA 248
                A A
Sbjct: 522 NSQRIAAA 529



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 32/141 (22%)

Query: 20  EQQRRYEVEIEELKNMA-RENEAMQQQSR-------QNTDLYSDVIACQNQGGEMLNAVR 71
           EQ R + V  +E++++A R +++ ++ +R       Q + +  D+  C NQG E L+A R
Sbjct: 444 EQGRGFAVVADEVRSLATRTHQSTEEITRVVSNIQSQMSQVVDDIDLCNNQGQETLSASR 503

Query: 72  D------------------------GIASSAEILTEEKESLSELDKIFDQTRVAIVNLGN 107
                                     I     ++    ES++EL+ I +    +      
Sbjct: 504 QLDESLQQILRDMHTIQDNSQRIAAAIEEQGSVMNHVSESIAELNTISENNMRSAQQCLT 563

Query: 108 RATYINKQATSSMQAVTELNS 128
               +++QA +  +AV E  +
Sbjct: 564 EVDTVSRQAHAMDEAVAEFRT 584