Pairwise Alignments

Query, 362 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (289), Expect = 3e-30
 Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 11/247 (4%)

Query: 3   FNSRLKAENEALKQKLLEQQRRYEVEIEELKNMARENEAMQQQSRQNTDLYSDVIACQNQ 62
           FN  ++  ++++K  + +  R  +V  E +   A       QQ R  T     V+   NQ
Sbjct: 355 FNGFIEKIHQSIKD-VAQTSRELQVAAEGVSRKALVTHDNSQQQRDQT---IQVVTAINQ 410

Query: 63  GGEMLNAVRDGIASSAEILTEEKESLSELDKIFDQTRVAIVNLGNRATYINKQATSSMQA 122
            G  ++ +    A++AE   +   +  +   + ++ + AI  L +      K        
Sbjct: 411 MGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGK-------V 463

Query: 123 VTELNSTTSSINQFVAAIQGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRQLASKA 182
           V +L STT  I   + AI+GISEQTNLLALNAAIEAARAG+ GRGFAVVADEVR LAS+ 
Sbjct: 464 VEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRT 523

Query: 183 HEASSQIEKLVKQIVTQASNIKEIVHNNQNSALDVASSSTQIGQVVEDVLQRSNNMQQVI 242
             ++ +I+K++ Q+   A N    +   +       ++S +  QV+  +  R +++    
Sbjct: 524 ASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRN 583

Query: 243 HNAATAS 249
              ATA+
Sbjct: 584 TQVATAT 590



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 50  TDLYSDVIACQNQGGEMLNAVRDGIASSAEILTEEKESLSELDKIFDQ 97
           T+  S V+   NQ  E +NA+ +   S+AE L +  +SL EL    D+
Sbjct: 590 TEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDK 637