Pairwise Alignments

Query, 362 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 563 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (285), Expect = 6e-30
 Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 16/206 (7%)

Query: 29  IEELKNMARENEAMQQQSRQNTDLYSDVIACQNQGGEMLNAVRDGIASSAEILTEEKESL 88
           + +L + A  N+   QQ + NT+  +  +A      +M   + + +ASSAE      ES 
Sbjct: 298 VTQLASSAESNKKSVQQQQANTEQVTSAMA------QMAITITE-VASSAE------ESS 344

Query: 89  SELDKIFDQTRVAIVNLGNRATYINK---QATSSMQAVTELNSTTSSINQFVAAIQGISE 145
           +   +  +  R +   LG   T  ++    A  S Q + EL ++T  I  FV  ++GISE
Sbjct: 345 AATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMIVELEASTRQIESFVLVVEGISE 404

Query: 146 QTNLLALNAAIEAARAGEAGRGFAVVADEVRQLASKAHEASSQIEKLVKQIVTQASNIKE 205
           QTNLLALNAAIEAARAGE GRGFAVVADEVR LAS++ +A+ +I+ L++ +V +A +  +
Sbjct: 405 QTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRSQQATHEIKGLIQTLVERAQSATK 464

Query: 206 IVHNNQNSALDVASSSTQIGQVVEDV 231
           ++ ++     +  SS T   + ++ +
Sbjct: 465 MIDSSDRQIEESFSSITAAKKQLDSI 490



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 26/150 (17%), Positives = 60/150 (40%), Gaps = 10/150 (6%)

Query: 90  ELDKIFDQTRVAIVNLGNRATYINKQATSSMQAVTELNSTTSSINQFVAAIQGISEQTNL 149
           E+ ++         +L +    +  +A +    VT+L S+  S  + V   Q  +EQ   
Sbjct: 265 EIGQLITSMNTMAQSLSHIVGEVIDRANTIASTVTQLASSAESNKKSVQQQQANTEQVTS 324

Query: 150 LALNAAIEAARAGEAGRGFAVVADEVRQLASKAHEASSQIEKLVKQIVTQASNIKEIVHN 209
                AI       +    +      ++ A  + +   + E +  Q+V  A   ++++  
Sbjct: 325 AMAQMAITITEVASSAEESSAATARAQENARYSCDVLGKTETVSSQLVANAQQSQQMI-- 382

Query: 210 NQNSALDVASSSTQIGQ---VVEDVLQRSN 236
                +++ +S+ QI     VVE + +++N
Sbjct: 383 -----VELEASTRQIESFVLVVEGISEQTN 407