Pairwise Alignments

Query, 362 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  104 bits (260), Expect = 5e-27
 Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 31/235 (13%)

Query: 7   LKAENEALKQKLLEQQRRYEVEIEELKNMARENEAMQQQSRQNTDLYSDVIACQNQGGEM 66
           +K  N   K  L +   R  +  +EL  +A  +E MQQ  RQ   L  ++I+   Q    
Sbjct: 221 MKQSNAIAKGDLSQTMDRSSIGNDELGTLANASEQMQQNLRQ---LIDEIISAVTQLSSA 277

Query: 67  LNAVRDGIASSAEILTEEKESLSELDKIFDQTRVAIVNLGNRATYINKQATSSM------ 120
           +  +      SA+ + E++  ++++     Q + A+ ++         QA ++       
Sbjct: 278 VEEMTQISNQSADGMKEQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEG 337

Query: 121 ----------------------QAVTELNSTTSSINQFVAAIQGISEQTNLLALNAAIEA 158
                                 Q V+EL   +S IN  V  I+ I++QTNLLALNAAIEA
Sbjct: 338 ARENASMVRSIQQVADIIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEA 397

Query: 159 ARAGEAGRGFAVVADEVRQLASKAHEASSQIEKLVKQIVTQASNIKEIVHNNQNS 213
           ARAGE+GRGFAVVADEVR LA +  +++ +I  +++++   A   K+    +++S
Sbjct: 398 ARAGESGRGFAVVADEVRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSS 452



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 46/238 (19%), Positives = 95/238 (39%), Gaps = 32/238 (13%)

Query: 7   LKAENEALKQKLLEQQRRYEVEIEEL------KNMARENEAMQQQSRQNTDLYSDVIACQ 60
           L  ++EA  ++ +E+  R + EI +            E E   ++   N + Y+ V    
Sbjct: 73  LPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMGNWNAYTAVTDQF 132

Query: 61  NQGGEMLNAVRDGIASSAEILTEEKESLSELDKIFDQTRVAIVNLGNRATYINKQATSSM 120
           NQ       +  G   +  IL     +   L+  F      ++ + ++A   NK     +
Sbjct: 133 NQ-----TLLTQGADDAYPILANSLSTFEALESDF----TLLIGILHQAMDSNK--VQIL 181

Query: 121 QAVTELNSTTSSINQFVAAIQGISEQ--TNLLALNAAIEAARAGEAGRGFAVVADEVRQL 178
            +V  LNST+ + N  + AI  +     T L+    AI   ++    +G      ++ Q 
Sbjct: 182 SSVKTLNSTSVASNIAILAIMVLMTWLLTRLICGPLAIVMKQSNAIAKG------DLSQT 235

Query: 179 ASKAHEASSQIEKLVKQIVTQASNIKEIVHNNQNSALDVASSSTQIGQVVEDVLQRSN 236
             ++   + ++  L         N+++++        ++ S+ TQ+   VE++ Q SN
Sbjct: 236 MDRSSIGNDELGTLANASEQMQQNLRQLID-------EIISAVTQLSSAVEEMTQISN 286